Variant report

Variant	rs7941054
Chromosome Location	chr11:86129021-86129022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1056194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898484	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11601917	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1563682	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2125362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2125363	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3741004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4412777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4544026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4944580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4944583	0.87[ASN][1000 genomes]
rs601646	0.81[AFR][1000 genomes]
rs621653	0.81[AFR][1000 genomes]
rs6592295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6592296	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7108055	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7109853	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7122239	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7122479	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7123773	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7946332	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
4	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
5	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
8	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:86122600-86133400	Weak transcription	Ovary	ovary
11	chr11:86123600-86136800	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:86124600-86142200	Weak transcription	Aorta	Aorta
13	chr11:86124800-86136600	Weak transcription	Brain Anterior Caudate	brain
14	chr11:86126200-86130000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:86127800-86133200	Weak transcription	K562	blood
16	chr11:86128000-86130200	Weak transcription	NHDF-Ad	bronchial
17	chr11:86128200-86129800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:86128200-86130200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:86128200-86133200	Weak transcription	Fetal Intestine Large	intestine
20	chr11:86128400-86130400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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