Variant report

Variant	rs441341
Chromosome Location	chrX:31110227-31110228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1484855	0.90[CEU][hapmap]
rs1921383	1.00[CEU][hapmap]
rs1921388	0.90[CEU][hapmap]
rs1921710	0.90[CEU][hapmap]
rs2404154	0.82[GIH][hapmap]
rs3361	0.86[YRI][hapmap]
rs426228	1.00[CEU][hapmap]
rs436628	0.90[CEU][hapmap]
rs5926986	1.00[CEU][hapmap]
rs5926987	1.00[CEU][hapmap]
rs5927688	0.90[CEU][hapmap]
rs5927689	1.00[CEU][hapmap]
rs5972322	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3416705	chrX:31099481-31213379	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31109600-31110400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:31109800-31111400	Enhancers	GM12878-XiMat	blood
3	chrX:31110000-31110400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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