Variant report

Variant	rs4415280
Chromosome Location	chr8:94989815-94989816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:94987851..94989359-chr8:94989772..94991888,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10454346	0.85[EUR][1000 genomes]
rs10454352	0.89[EUR][1000 genomes]
rs10464832	0.90[EUR][1000 genomes]
rs10808664	0.90[EUR][1000 genomes]
rs10808665	0.87[EUR][1000 genomes]
rs10956891	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956892	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956893	0.91[EUR][1000 genomes]
rs11774322	0.86[EUR][1000 genomes]
rs11783696	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11784805	0.89[EUR][1000 genomes]
rs11787272	0.88[EUR][1000 genomes]
rs12675328	0.84[EUR][1000 genomes]
rs12681770	0.87[EUR][1000 genomes]
rs12681774	0.87[EUR][1000 genomes]
rs16916334	0.87[EUR][1000 genomes]
rs16916340	0.87[EUR][1000 genomes]
rs16916344	0.87[EUR][1000 genomes]
rs3115942	0.89[EUR][1000 genomes]
rs3115943	0.88[EUR][1000 genomes]
rs3115947	0.89[EUR][1000 genomes]
rs3134014	0.88[EUR][1000 genomes]
rs3134015	0.89[EUR][1000 genomes]
rs3134018	0.89[EUR][1000 genomes]
rs3134019	0.84[EUR][1000 genomes]
rs4236822	0.88[EUR][1000 genomes]
rs4236823	0.89[EUR][1000 genomes]
rs4483119	0.87[EUR][1000 genomes]
rs4489299	0.87[EUR][1000 genomes]
rs4496935	0.87[EUR][1000 genomes]
rs55813436	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59369332	0.89[EUR][1000 genomes]
rs62523012	0.82[EUR][1000 genomes]
rs62523013	0.88[EUR][1000 genomes]
rs6471417	0.89[EUR][1000 genomes]
rs67035385	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7812529	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7817292	0.90[EUR][1000 genomes]
rs7831416	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7835189	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv518975	chr8:94985722-94992958	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94987400-94991200	Weak transcription	Fetal Intestine Large	intestine
2	chr8:94987800-94990400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:94989600-94994400	Enhancers	Fetal Intestine Small	intestine
4	chr8:94989800-94990800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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