Variant report

Variant	rs10454352
Chromosome Location	chr8:94982239-94982240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10454346	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464832	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808664	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10808665	0.86[EUR][1000 genomes]
rs10956891	0.91[EUR][1000 genomes]
rs10956892	0.89[EUR][1000 genomes]
rs10956893	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11774322	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11783696	0.90[EUR][1000 genomes]
rs11784805	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11787272	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12675328	0.83[EUR][1000 genomes]
rs12681770	0.86[EUR][1000 genomes]
rs12681774	0.86[EUR][1000 genomes]
rs16916334	0.86[EUR][1000 genomes]
rs16916340	0.86[EUR][1000 genomes]
rs16916344	0.86[EUR][1000 genomes]
rs3115942	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3115943	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3115947	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134014	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134015	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134018	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134019	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134020	0.88[EUR][1000 genomes]
rs4236822	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236823	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4391396	0.82[EUR][1000 genomes]
rs4397372	0.85[EUR][1000 genomes]
rs4415280	0.89[EUR][1000 genomes]
rs4483119	0.86[EUR][1000 genomes]
rs4489299	0.86[EUR][1000 genomes]
rs4496935	0.86[EUR][1000 genomes]
rs4579497	0.82[EUR][1000 genomes]
rs55813436	0.91[EUR][1000 genomes]
rs59369332	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62523012	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62523013	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67035385	0.91[EUR][1000 genomes]
rs7812529	0.90[EUR][1000 genomes]
rs7817292	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7831416	0.90[EUR][1000 genomes]
rs7835189	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94980800-94982400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr8:94981800-94982400	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr8:94982000-94982400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:94982000-94984400	Weak transcription	HepG2	liver
5	chr8:94982000-94985200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:94982200-94983800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr8:94982200-94984000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:94982200-94984000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links