Variant report

Variant	rs11784805
Chromosome Location	chr8:94981792-94981793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr8:94981540-94981912	A549	lung:	n/a	n/a
2	FOXA1	chr8:94981533-94981937	HepG2	liver:	n/a	n/a
3	FOXP2	chr8:94981574-94981850	PFSK-1	brain:	n/a	n/a
4	FOXA1	chr8:94981612-94981849	HepG2	liver:	n/a	n/a
5	FOXA2	chr8:94981581-94981857	HepG2	liver:	n/a	n/a
6	FOXA2	chr8:94981634-94981937	A549	lung:	n/a	n/a
7	FOXA1	chr8:94981555-94982009	HepG2	liver:	n/a	n/a
8	FOXA1	chr8:94981520-94981860	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000263855	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10454346	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10454352	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10464832	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808664	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10808665	0.86[EUR][1000 genomes]
rs10956891	0.91[EUR][1000 genomes]
rs10956892	0.89[EUR][1000 genomes]
rs10956893	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11774322	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11783696	0.90[EUR][1000 genomes]
rs11787272	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12675328	0.83[EUR][1000 genomes]
rs12681770	0.86[EUR][1000 genomes]
rs12681774	0.86[EUR][1000 genomes]
rs16916334	0.86[EUR][1000 genomes]
rs16916340	0.86[EUR][1000 genomes]
rs16916344	0.86[EUR][1000 genomes]
rs3115942	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3115943	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3115947	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134014	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134015	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134018	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134019	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134020	0.88[EUR][1000 genomes]
rs4236822	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236823	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4391396	0.82[EUR][1000 genomes]
rs4397372	0.85[EUR][1000 genomes]
rs4415280	0.89[EUR][1000 genomes]
rs4483119	0.86[EUR][1000 genomes]
rs4489299	0.86[EUR][1000 genomes]
rs4496935	0.86[EUR][1000 genomes]
rs4579497	0.82[EUR][1000 genomes]
rs55813436	0.91[EUR][1000 genomes]
rs59369332	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62523012	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62523013	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471417	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67035385	0.91[EUR][1000 genomes]
rs7812529	0.90[EUR][1000 genomes]
rs7817292	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7831416	0.90[EUR][1000 genomes]
rs7835189	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94980800-94982200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:94980800-94982200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:94980800-94982400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr8:94981000-94982000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr8:94981000-94982200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr8:94981000-94982200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr8:94981400-94982000	Enhancers	Fetal Intestine Large	intestine
8	chr8:94981600-94981800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:94981600-94981800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr8:94981600-94982000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:94981600-94982000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:94981600-94982000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:94981600-94982000	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:94981600-94982000	Enhancers	Primary T cells from cord blood	blood
15	chr8:94981600-94982000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:94981600-94982000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:94981600-94982000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:94981600-94982000	Enhancers	Gastric	stomach
19	chr8:94981600-94982000	Enhancers	Stomach Mucosa	stomach
20	chr8:94981600-94982000	Enhancers	HepG2	liver
21	chr8:94981600-94982200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:94981600-94982200	Enhancers	Lung	lung

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