Variant report

Variant	rs4418698
Chromosome Location	chr10:18763854-18763855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10828764	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10828765	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828766	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6482471	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7067797	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7076100	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7076562	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7476477	0.94[ASN][1000 genomes]
rs7897506	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7921738	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4418698	C10orf140	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18753000-18775600	Weak transcription	Right Atrium	heart
3	chr10:18760000-18765000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:18761600-18764800	Weak transcription	Dnd41	blood
5	chr10:18761800-18766800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18762000-18764000	Enhancers	Brain Germinal Matrix	brain
7	chr10:18762200-18769600	Enhancers	Fetal Heart	heart
8	chr10:18762400-18764000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:18763200-18764400	Enhancers	Right Ventricle	heart
10	chr10:18763200-18765800	Enhancers	Left Ventricle	heart
11	chr10:18763400-18764000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:18763400-18764000	Weak transcription	Fetal Stomach	stomach
13	chr10:18763400-18764600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:18763400-18764800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr10:18763400-18766600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:18763600-18767400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:18763600-18778400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:18763800-18764000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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