Variant report

Variant	rs6482471
Chromosome Location	chr10:18769793-18769794
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10828749	0.80[ASN][1000 genomes]
rs10828764	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828766	0.80[AMR][1000 genomes]
rs10828773	0.85[ASN][1000 genomes]
rs11014500	0.85[ASN][1000 genomes]
rs4418698	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59027704	0.84[ASN][1000 genomes]
rs7069894	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7076100	0.82[AMR][1000 genomes]
rs7076562	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7084044	0.88[ASN][1000 genomes]
rs7097047	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7897506	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7921738	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18753000-18775600	Weak transcription	Right Atrium	heart
3	chr10:18763600-18778400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:18765800-18771400	Weak transcription	Left Ventricle	heart
5	chr10:18766800-18771800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:18767800-18772400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:18769600-18773000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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