Variant report

Variant	rs7897506
Chromosome Location	chr10:18765836-18765837
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10828749	0.82[ASN][1000 genomes]
rs10828764	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828766	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4418698	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59027704	0.85[ASN][1000 genomes]
rs6482471	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7069894	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7076100	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7076562	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7084044	0.89[ASN][1000 genomes]
rs7097047	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7921738	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18753000-18775600	Weak transcription	Right Atrium	heart
3	chr10:18761800-18766800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:18762200-18769600	Enhancers	Fetal Heart	heart
5	chr10:18763400-18766600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:18763600-18767400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:18763600-18778400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:18764000-18766400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:18764800-18767800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:18765400-18767400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:18765400-18767600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:18765800-18771400	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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