Variant report

Variant	rs4423543
Chromosome Location	chr2:212536046-212536047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10183757	1.00[JPT][hapmap]
rs10207288	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12476100	1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13001867	1.00[JPT][hapmap]
rs13003212	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13019783	1.00[JPT][hapmap]
rs13424871	1.00[JPT][hapmap]
rs16846710	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17413784	1.00[JPT][hapmap]
rs1829615	0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1851168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2272024	1.00[JPT][hapmap]
rs2371278	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2371279	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34807898	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35043628	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35882647	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3817429	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs60655490	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6705698	1.00[JPT][hapmap]
rs6705988	1.00[JPT][hapmap]
rs6714941	1.00[JPT][hapmap]
rs6722300	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6725181	1.00[JPT][hapmap]
rs6759039	0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7426203	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv460070	chr2:212492764-212541377	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv584322	chr2:212492764-212541377	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv979383	chr2:212534182-212537755	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212521200-212540400	Weak transcription	Fetal Heart	heart
3	chr2:212521400-212540800	Weak transcription	Fetal Kidney	kidney
4	chr2:212522800-212537800	Weak transcription	Pancreas	Pancrea
5	chr2:212528800-212545200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
7	chr2:212535000-212536600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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