Variant report

Variant	rs3817429
Chromosome Location	chr2:212544193-212544194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10179476	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10181864	0.85[ASN][1000 genomes]
rs10183757	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10190554	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10191972	0.82[CHB][hapmap];0.91[CHD][hapmap];0.88[ASN][1000 genomes]
rs10207288	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.80[MEX][hapmap];0.90[MKK][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10932392	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11893380	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs12470629	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476100	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs12694250	0.88[ASN][1000 genomes]
rs13001867	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13003212	0.93[ASN][1000 genomes]
rs13016387	0.85[ASN][1000 genomes]
rs13019022	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13019783	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13026360	0.88[ASN][1000 genomes]
rs13420886	0.88[ASN][1000 genomes]
rs13424871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16846710	0.90[ASW][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs17413784	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1829615	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1851168	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1851191	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272024	0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2371278	0.90[ASN][1000 genomes]
rs2371279	0.90[ASN][1000 genomes]
rs34579531	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34658976	0.88[ASN][1000 genomes]
rs34678713	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34807898	0.98[ASN][1000 genomes]
rs35043628	0.87[ASN][1000 genomes]
rs35762488	0.88[ASN][1000 genomes]
rs35882647	0.98[ASN][1000 genomes]
rs4315465	0.88[ASN][1000 genomes]
rs4423543	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs4493186	0.85[ASN][1000 genomes]
rs58225230	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59853762	0.88[ASN][1000 genomes]
rs60655490	0.93[ASN][1000 genomes]
rs61257038	0.88[ASN][1000 genomes]
rs6435654	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6705698	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6705988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6710649	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6714941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722300	0.93[ASN][1000 genomes]
rs6725181	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6730119	0.91[TSI][hapmap]
rs6759039	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6759054	1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71422750	0.88[ASN][1000 genomes]
rs7425341	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7588697	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9798120	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3817429	GABARAP	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212528800-212545200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
4	chr2:212538000-212546800	Weak transcription	Pancreas	Pancrea
5	chr2:212541000-212546800	Weak transcription	Fetal Kidney	kidney
6	chr2:212543600-212544200	Enhancers	HUVEC	blood vessel
7	chr2:212543800-212544200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links