Variant report

Variant	rs35762488
Chromosome Location	chr2:212546559-212546560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10179476	0.88[ASN][1000 genomes]
rs10181864	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10183757	0.82[ASN][1000 genomes]
rs10190554	0.88[ASN][1000 genomes]
rs10191972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207288	0.80[ASN][1000 genomes]
rs10932392	0.85[ASN][1000 genomes]
rs11893380	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328907	0.86[ASN][1000 genomes]
rs12470629	0.88[ASN][1000 genomes]
rs12694250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13001867	0.82[ASN][1000 genomes]
rs13003212	0.80[ASN][1000 genomes]
rs13016387	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13018333	0.86[ASN][1000 genomes]
rs13019022	0.88[ASN][1000 genomes]
rs13019783	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026360	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424871	0.85[ASN][1000 genomes]
rs17413784	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1829615	0.88[ASN][1000 genomes]
rs1851191	0.88[ASN][1000 genomes]
rs2272024	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621071	0.86[ASN][1000 genomes]
rs34658976	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34678713	0.88[ASN][1000 genomes]
rs34807898	0.86[ASN][1000 genomes]
rs35882647	0.86[ASN][1000 genomes]
rs3817429	0.88[ASN][1000 genomes]
rs4315465	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4493186	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58225230	0.82[ASN][1000 genomes]
rs59853762	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60655490	0.80[ASN][1000 genomes]
rs61257038	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6435654	0.95[ASN][1000 genomes]
rs6705698	0.82[ASN][1000 genomes]
rs6705988	0.82[ASN][1000 genomes]
rs6710649	0.86[ASN][1000 genomes]
rs6714941	0.88[ASN][1000 genomes]
rs6722300	0.80[ASN][1000 genomes]
rs6725181	0.90[ASN][1000 genomes]
rs6732128	0.88[ASN][1000 genomes]
rs6759039	0.82[ASN][1000 genomes]
rs6759054	0.82[ASN][1000 genomes]
rs71422749	0.82[ASN][1000 genomes]
rs71422750	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7425341	0.88[ASN][1000 genomes]
rs7588697	0.88[ASN][1000 genomes]
rs9798120	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
3	chr2:212538000-212546800	Weak transcription	Pancreas	Pancrea
4	chr2:212541000-212546800	Weak transcription	Fetal Kidney	kidney
5	chr2:212546200-212546600	Weak transcription	Brain Cingulate Gyrus	brain

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