Variant report

Variant	rs60655490
Chromosome Location	chr2:212540545-212540546
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10179476	0.93[ASN][1000 genomes]
rs10183757	0.97[ASN][1000 genomes]
rs10190554	0.93[ASN][1000 genomes]
rs10191972	0.80[ASN][1000 genomes]
rs10207288	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932392	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11893380	0.80[ASN][1000 genomes]
rs12470629	0.93[ASN][1000 genomes]
rs12476100	0.83[AMR][1000 genomes]
rs12694250	0.80[ASN][1000 genomes]
rs13001867	0.97[ASN][1000 genomes]
rs13003212	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13019022	0.93[ASN][1000 genomes]
rs13019783	0.80[ASN][1000 genomes]
rs13026360	0.80[ASN][1000 genomes]
rs13420886	0.80[ASN][1000 genomes]
rs13424871	0.90[ASN][1000 genomes]
rs16846710	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1829615	0.93[ASN][1000 genomes]
rs1851191	0.93[ASN][1000 genomes]
rs2272024	0.80[ASN][1000 genomes]
rs2371278	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371279	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34579531	0.93[ASN][1000 genomes]
rs34658976	0.80[ASN][1000 genomes]
rs34678713	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34807898	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35043628	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35762488	0.80[ASN][1000 genomes]
rs35882647	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3817429	0.93[ASN][1000 genomes]
rs4315465	0.80[ASN][1000 genomes]
rs4423543	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58225230	0.97[ASN][1000 genomes]
rs59853762	0.80[ASN][1000 genomes]
rs61257038	0.80[ASN][1000 genomes]
rs6435654	0.85[ASN][1000 genomes]
rs6705698	0.97[ASN][1000 genomes]
rs6705988	0.97[ASN][1000 genomes]
rs6710649	0.90[ASN][1000 genomes]
rs6714941	0.93[ASN][1000 genomes]
rs6722300	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725181	0.85[ASN][1000 genomes]
rs6759039	0.97[ASN][1000 genomes]
rs6759054	0.97[ASN][1000 genomes]
rs71422750	0.80[ASN][1000 genomes]
rs7425341	0.93[ASN][1000 genomes]
rs7588697	0.93[ASN][1000 genomes]
rs9798120	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754366	chr2:212470494-212541494	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv460070	chr2:212492764-212541377	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv584322	chr2:212492764-212541377	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212467400-212546800	Weak transcription	Aorta	Aorta
2	chr2:212521400-212540800	Weak transcription	Fetal Kidney	kidney
3	chr2:212528800-212545200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:212530200-212546800	Weak transcription	Left Ventricle	heart
5	chr2:212538000-212546800	Weak transcription	Pancreas	Pancrea
6	chr2:212538200-212543800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:212540200-212541000	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links