Variant report

Variant	rs6435654
Chromosome Location	chr2:212547935-212547936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10179476	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10181864	0.92[ASN][1000 genomes]
rs10183757	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10190554	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10191972	0.95[ASN][1000 genomes]
rs10207288	0.85[ASN][1000 genomes]
rs10932392	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11893380	0.95[ASN][1000 genomes]
rs12328907	0.81[ASN][1000 genomes]
rs12470629	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12694250	0.95[ASN][1000 genomes]
rs13001867	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13003212	0.85[ASN][1000 genomes]
rs13016387	0.92[ASN][1000 genomes]
rs13018333	0.82[ASN][1000 genomes]
rs13019022	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13019783	0.95[ASN][1000 genomes]
rs13026360	0.95[ASN][1000 genomes]
rs13420886	0.95[ASN][1000 genomes]
rs13424871	0.80[ASN][1000 genomes]
rs17413784	0.92[ASN][1000 genomes]
rs1829615	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1851168	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1851191	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2272024	0.95[ASN][1000 genomes]
rs2371278	0.83[ASN][1000 genomes]
rs2371279	0.83[ASN][1000 genomes]
rs34579531	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34621071	0.81[ASN][1000 genomes]
rs34658976	0.95[ASN][1000 genomes]
rs34678713	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34807898	0.90[ASN][1000 genomes]
rs35043628	0.81[ASN][1000 genomes]
rs35762488	0.95[ASN][1000 genomes]
rs35882647	0.90[ASN][1000 genomes]
rs3817429	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4493186	0.92[ASN][1000 genomes]
rs58225230	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60655490	0.85[ASN][1000 genomes]
rs61257038	0.95[ASN][1000 genomes]
rs6705698	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6705988	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6710649	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6714941	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6722300	0.85[ASN][1000 genomes]
rs6725181	0.85[ASN][1000 genomes]
rs6732128	0.83[ASN][1000 genomes]
rs6759039	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6759054	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71422750	0.95[ASN][1000 genomes]
rs7425341	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7588697	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9798120	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875783	chr2:212530466-212564895	Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212547200-212568600	Weak transcription	Fetal Kidney	kidney

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