Variant report

Variant	rs4428489
Chromosome Location	chr6:54980231-54980232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:74703120..74703896-chr6:54980071..54980846,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10485135	1.00[EUR][1000 genomes]
rs10948871	1.00[EUR][1000 genomes]
rs11961881	1.00[EUR][1000 genomes]
rs11964483	1.00[EUR][1000 genomes]
rs12111294	1.00[EUR][1000 genomes]
rs12111299	1.00[EUR][1000 genomes]
rs16886234	1.00[EUR][1000 genomes]
rs16886244	1.00[EUR][1000 genomes]
rs16886248	1.00[EUR][1000 genomes]
rs16886267	1.00[EUR][1000 genomes]
rs2062780	1.00[EUR][1000 genomes]
rs2062781	1.00[EUR][1000 genomes]
rs2088944	1.00[EUR][1000 genomes]
rs2088946	1.00[EUR][1000 genomes]
rs4327697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55954156	1.00[EUR][1000 genomes]
rs57287621	1.00[EUR][1000 genomes]
rs58495896	1.00[EUR][1000 genomes]
rs60013096	1.00[EUR][1000 genomes]
rs60517516	1.00[EUR][1000 genomes]
rs60631253	1.00[EUR][1000 genomes]
rs61515728	1.00[EUR][1000 genomes]
rs6906651	1.00[EUR][1000 genomes]
rs6915116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6933855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73431481	1.00[EUR][1000 genomes]
rs73432338	1.00[EUR][1000 genomes]
rs73432360	1.00[EUR][1000 genomes]
rs73432383	1.00[EUR][1000 genomes]
rs73434410	1.00[EUR][1000 genomes]
rs73437015	1.00[EUR][1000 genomes]
rs73437019	1.00[EUR][1000 genomes]
rs73437034	1.00[EUR][1000 genomes]
rs73742869	1.00[EUR][1000 genomes]
rs9296772	1.00[EUR][1000 genomes]
rs9464164	1.00[EUR][1000 genomes]
rs9464165	1.00[EUR][1000 genomes]
rs9464168	1.00[EUR][1000 genomes]
rs9464169	1.00[EUR][1000 genomes]
rs9464170	1.00[EUR][1000 genomes]
rs9475070	1.00[EUR][1000 genomes]
rs9475071	1.00[EUR][1000 genomes]
rs9475074	1.00[EUR][1000 genomes]
rs9475076	1.00[EUR][1000 genomes]
rs9475080	1.00[EUR][1000 genomes]
rs9475084	1.00[EUR][1000 genomes]
rs9475086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033543	chr6:54978528-55000338	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54979200-54980400	Enhancers	Duodenum Mucosa	Duodenum
2	chr6:54979600-54980400	Enhancers	Fetal Intestine Small	intestine

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