Variant report

Variant	rs4430033
Chromosome Location	chr7:116872402-116872403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10265828	1.00[EUR][1000 genomes]
rs11980583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981502	1.00[EUR][1000 genomes]
rs11983151	1.00[EUR][1000 genomes]
rs17139469	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139484	0.88[ASN][1000 genomes]
rs2106627	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730767	1.00[EUR][1000 genomes]
rs60356864	1.00[EUR][1000 genomes]
rs60412272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6967851	1.00[EUR][1000 genomes]
rs73470843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714631	1.00[EUR][1000 genomes]
rs73714633	1.00[EUR][1000 genomes]
rs73714637	1.00[EUR][1000 genomes]
rs7804397	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116844000-116872600	Weak transcription	Right Ventricle	heart
2	chr7:116859800-116873000	Weak transcription	Brain Substantia Nigra	brain
3	chr7:116859800-116878000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:116860400-116872800	Weak transcription	Brain Angular Gyrus	brain
5	chr7:116864000-116873000	Weak transcription	Fetal Brain Male	brain
6	chr7:116869600-116874400	Weak transcription	Brain Germinal Matrix	brain
7	chr7:116870000-116878600	Weak transcription	Pancreas	Pancrea
8	chr7:116870200-116872600	Weak transcription	Aorta	Aorta
9	chr7:116870400-116872600	Weak transcription	Placenta	Placenta
10	chr7:116870400-116873600	Weak transcription	HSMMtube	muscle
11	chr7:116870600-116872800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:116870600-116873000	Weak transcription	Lung	lung
13	chr7:116871200-116873000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:116871200-116874800	Weak transcription	Fetal Brain Female	brain
15	chr7:116871400-116875400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:116871600-116873000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links