Variant report

Variant	rs60412272
Chromosome Location	chr7:116871460-116871461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116865370..116869396-chr7:116871341..116874775,5	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10265828	1.00[EUR][1000 genomes]
rs11980583	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981502	1.00[EUR][1000 genomes]
rs11983151	1.00[EUR][1000 genomes]
rs17139469	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139484	0.88[ASN][1000 genomes]
rs2106627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4430033	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4730767	1.00[EUR][1000 genomes]
rs60356864	1.00[EUR][1000 genomes]
rs6466601	1.00[ASN][1000 genomes]
rs6967851	1.00[EUR][1000 genomes]
rs73470843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73714631	1.00[EUR][1000 genomes]
rs73714633	1.00[EUR][1000 genomes]
rs73714637	1.00[EUR][1000 genomes]
rs7804397	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831108	chr7:116749534-116952011	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116808400-116871800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr7:116840000-116871800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:116844000-116872600	Weak transcription	Right Ventricle	heart
4	chr7:116849400-116872000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:116859800-116871600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:116859800-116872200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:116859800-116873000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:116859800-116878000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:116860400-116872800	Weak transcription	Brain Angular Gyrus	brain
10	chr7:116861000-116872000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:116863600-116871800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:116863600-116872200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:116863800-116872000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:116863800-116872000	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:116863800-116872200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:116864000-116873000	Weak transcription	Fetal Brain Male	brain
17	chr7:116866600-116871800	Weak transcription	Fetal Intestine Large	intestine
18	chr7:116868000-116872000	Weak transcription	Fetal Lung	lung
19	chr7:116868800-116871600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:116868800-116871600	Enhancers	NHLF	lung
21	chr7:116869400-116871600	Enhancers	NHDF-Ad	bronchial
22	chr7:116869400-116871800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:116869600-116874400	Weak transcription	Brain Germinal Matrix	brain
24	chr7:116869800-116871600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:116870000-116872000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:116870000-116872400	Weak transcription	Fetal Intestine Small	intestine
27	chr7:116870000-116878600	Weak transcription	Pancreas	Pancrea
28	chr7:116870200-116871600	Weak transcription	Brain Anterior Caudate	brain
29	chr7:116870200-116872600	Weak transcription	Aorta	Aorta
30	chr7:116870400-116872000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:116870400-116872600	Weak transcription	Placenta	Placenta
32	chr7:116870400-116873600	Weak transcription	HSMMtube	muscle
33	chr7:116870600-116871600	Enhancers	GM12878-XiMat	blood
34	chr7:116870600-116872000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:116870600-116872200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr7:116870600-116872200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:116870600-116872400	Weak transcription	Liver	Liver
38	chr7:116870600-116872400	Weak transcription	Left Ventricle	heart
39	chr7:116870600-116872800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:116870600-116873000	Weak transcription	Lung	lung
41	chr7:116870800-116872200	Enhancers	Dnd41	blood
42	chr7:116870800-116872400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:116871200-116873000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr7:116871200-116874800	Weak transcription	Fetal Brain Female	brain
45	chr7:116871400-116871600	Weak transcription	Fetal Stomach	stomach
46	chr7:116871400-116875400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links