Variant report

Variant	rs73714637
Chromosome Location	chr7:116988768-116988769
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11980583	1.00[EUR][1000 genomes]
rs11981502	1.00[EUR][1000 genomes]
rs11983151	1.00[EUR][1000 genomes]
rs17139469	1.00[EUR][1000 genomes]
rs2106627	1.00[EUR][1000 genomes]
rs4430033	1.00[EUR][1000 genomes]
rs60356864	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60412272	1.00[EUR][1000 genomes]
rs6967851	1.00[EUR][1000 genomes]
rs73470843	1.00[EUR][1000 genomes]
rs73714631	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73714633	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7804397	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116988000-116989600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:116988600-116989800	Enhancers	GM12878-XiMat	blood
3	chr7:116988600-116990000	Enhancers	Brain Substantia Nigra	brain
4	chr7:116988600-116990400	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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