Variant report

Variant	rs4431232
Chromosome Location	chr4:95708677-95708678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11932119	1.00[ASN][1000 genomes]
rs12508087	0.82[ASN][1000 genomes]
rs12508155	0.81[ASN][1000 genomes]
rs4401458	0.90[ASN][1000 genomes]
rs4425388	0.84[ASN][1000 genomes]
rs4456963	0.88[ASN][1000 genomes]
rs4699690	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6817189	0.96[ASN][1000 genomes]
rs6842692	0.96[ASN][1000 genomes]
rs6844958	0.84[ASN][1000 genomes]
rs7673420	0.90[ASN][1000 genomes]
rs7694754	0.82[ASN][1000 genomes]
rs7694987	0.82[ASN][1000 genomes]
rs9307147	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95704800-95711200	Weak transcription	A549	lung
2	chr4:95705000-95711000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:95705200-95711400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:95705400-95709000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:95706800-95709200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:95707400-95709600	Weak transcription	Aorta	Aorta
7	chr4:95708200-95710600	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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