Variant report

Variant	rs11932119
Chromosome Location	chr4:95705112-95705113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10004956	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10016113	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10023740	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10033997	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11097439	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11097440	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11729530	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11730377	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11733843	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12501965	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12508087	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs12508155	0.81[ASN][1000 genomes]
rs12509881	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13141832	0.89[AFR][1000 genomes]
rs28450092	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28496184	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28551772	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28864517	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35575650	0.90[AFR][1000 genomes]
rs4401458	0.94[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4425388	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs4431232	1.00[ASN][1000 genomes]
rs4456963	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs4467574	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs4552469	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4599420	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4699683	0.82[CHB][hapmap]
rs4699690	0.97[ASN][1000 genomes]
rs4699694	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6532509	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6817189	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6840605	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6840866	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6842692	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6844958	0.84[ASN][1000 genomes]
rs7673420	0.90[ASN][1000 genomes]
rs7684060	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7694754	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs7694987	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs9307147	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95704400-95705200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:95704800-95711200	Weak transcription	A549	lung
3	chr4:95705000-95711000	Weak transcription	Fetal Muscle Leg	muscle

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