Variant report

Variant	rs6532509
Chromosome Location	chr4:95723861-95723862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10004956	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10016113	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10023740	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10033997	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10516954	0.95[AFR][1000 genomes]
rs11097439	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097440	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11729530	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11730377	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11733843	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11929751	0.96[AFR][1000 genomes]
rs11932119	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11943082	0.96[AFR][1000 genomes]
rs12509881	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13106939	0.81[AFR][1000 genomes]
rs13115538	0.92[AFR][1000 genomes]
rs13130042	0.86[AFR][1000 genomes]
rs13138560	0.96[AFR][1000 genomes]
rs13139957	0.82[AFR][1000 genomes]
rs13140820	0.95[AFR][1000 genomes]
rs13141292	0.95[AFR][1000 genomes]
rs13146661	0.95[AFR][1000 genomes]
rs13149911	0.95[AFR][1000 genomes]
rs1472960	0.99[ASN][1000 genomes]
rs1472964	0.93[AFR][1000 genomes]
rs1509619	0.85[AFR][1000 genomes]
rs17022181	0.84[AFR][1000 genomes]
rs28450092	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28496184	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28551772	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28864517	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34618938	0.96[AFR][1000 genomes]
rs34752274	0.82[AFR][1000 genomes]
rs35070714	0.96[AFR][1000 genomes]
rs35271777	0.83[AFR][1000 genomes]
rs35288991	0.96[AFR][1000 genomes]
rs35501794	0.85[AFR][1000 genomes]
rs35627971	0.84[AFR][1000 genomes]
rs35965331	0.96[AFR][1000 genomes]
rs4467574	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4504261	0.94[ASN][1000 genomes]
rs4552469	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4599420	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4699691	0.93[ASN][1000 genomes]
rs4699694	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62316513	0.82[AFR][1000 genomes]
rs6817189	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6838436	0.82[AFR][1000 genomes]
rs6840605	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840866	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6842692	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7667095	0.83[AFR][1000 genomes]
rs7667584	0.83[AFR][1000 genomes]
rs7677261	0.95[AFR][1000 genomes]
rs7677422	0.95[AFR][1000 genomes]
rs7693277	0.90[AFR][1000 genomes]
rs925282	0.90[AFR][1000 genomes]
rs925283	0.90[AFR][1000 genomes]
rs9307147	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs955735	0.95[AFR][1000 genomes]
rs997902	0.96[AFR][1000 genomes]
rs997903	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594906	chr4:95713679-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007391	chr4:95713679-95763860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002004	chr4:95717063-95755436	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999588	chr4:95717063-95763860	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv997960	chr4:95719585-95766067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537188	chr4:95719585-95766067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95710400-95732400	Weak transcription	Aorta	Aorta
2	chr4:95713800-95725800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:95720400-95726200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:95722200-95724200	Enhancers	Fetal Heart	heart
5	chr4:95723000-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:95723600-95726200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:95723600-95733600	Weak transcription	Ovary	ovary
8	chr4:95723800-95725600	Weak transcription	A549	lung
9	chr4:95723800-95726400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:95723800-95727200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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