Variant report

Variant	rs6842692
Chromosome Location	chr4:95727506-95727507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10004956	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10016113	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10023740	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10033997	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11097439	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11097440	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11729530	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11730377	0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11733843	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11932119	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12501965	0.83[YRI][hapmap]
rs12508087	0.87[CHB][hapmap]
rs12509881	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28450092	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28496184	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28551772	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28864517	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4401458	0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs4425388	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs4431232	0.96[ASN][1000 genomes]
rs4456963	0.93[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs4467574	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4552469	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4599420	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4699683	0.87[CHB][hapmap]
rs4699690	0.93[ASN][1000 genomes]
rs4699694	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6532509	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6817189	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840605	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6840866	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6844958	0.80[ASN][1000 genomes]
rs7673420	0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs7684060	0.82[YRI][hapmap]
rs7685389	0.81[ASN][1000 genomes]
rs7694754	0.80[CHB][hapmap]
rs7694987	0.87[CHB][hapmap]
rs9307147	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv518579	chr4:95706337-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594906	chr4:95713679-95755544	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1007391	chr4:95713679-95763860	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1002004	chr4:95717063-95755436	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv999588	chr4:95717063-95763860	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv997960	chr4:95719585-95766067	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv537188	chr4:95719585-95766067	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95710400-95732400	Weak transcription	Aorta	Aorta
2	chr4:95723000-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:95723600-95733600	Weak transcription	Ovary	ovary
4	chr4:95724800-95727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:95725800-95728000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:95726200-95728000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95726200-95728000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:95726800-95730600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:95727200-95727800	Flanking Active TSS	A549	lung
10	chr4:95727200-95728000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:95727400-95727800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:95727400-95728000	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links