Variant report

Variant	rs12501965
Chromosome Location	chr4:95706285-95706286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10516954	0.87[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs11929751	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs11932119	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11943082	0.87[CEU][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs13106939	0.90[EUR][1000 genomes]
rs13113279	1.00[ASN][1000 genomes]
rs13130042	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13138560	0.92[EUR][1000 genomes]
rs13140820	0.92[EUR][1000 genomes]
rs13141292	0.92[EUR][1000 genomes]
rs13141832	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146661	0.92[EUR][1000 genomes]
rs13149911	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs1348606	1.00[JPT][hapmap]
rs1472964	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1509619	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17022181	0.92[EUR][1000 genomes]
rs17022183	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs17022258	0.95[CEU][hapmap]
rs28427211	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34051091	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34618938	0.91[EUR][1000 genomes]
rs34752274	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35070714	0.90[EUR][1000 genomes]
rs35271777	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35288991	0.88[EUR][1000 genomes]
rs35501794	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35575650	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35627971	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35965331	0.92[EUR][1000 genomes]
rs35966527	1.00[ASN][1000 genomes]
rs4455423	1.00[JPT][hapmap]
rs60213345	1.00[ASN][1000 genomes]
rs62316513	0.92[EUR][1000 genomes]
rs6532507	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6817189	0.89[AFR][1000 genomes]
rs6819188	0.86[CEU][hapmap];0.87[GIH][hapmap]
rs6837341	0.92[EUR][1000 genomes]
rs6838436	0.92[EUR][1000 genomes]
rs6842692	0.83[YRI][hapmap]
rs71601231	0.81[EUR][1000 genomes]
rs7667095	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7667584	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7677261	0.87[CEU][hapmap];0.95[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs7677422	0.92[EUR][1000 genomes]
rs7684060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693277	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7698964	1.00[JPT][hapmap]
rs925282	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs925283	0.91[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9307147	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs955735	0.92[EUR][1000 genomes]
rs997902	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs997903	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95704800-95711200	Weak transcription	A549	lung
2	chr4:95705000-95711000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:95705200-95711400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:95705400-95709000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:95706000-95706800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:95706000-95706800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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