Variant report

Variant	rs6819188
Chromosome Location	chr4:95694977-95694978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10004956	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs10016113	0.88[AFR][1000 genomes]
rs10023740	0.82[AFR][1000 genomes]
rs10033997	0.88[AFR][1000 genomes]
rs10516954	0.96[CEU][hapmap];0.90[GIH][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11097439	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs11097440	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs11729530	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs11730377	0.96[YRI][hapmap]
rs11733843	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs11929751	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11943082	0.88[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12501965	0.86[CEU][hapmap];0.87[GIH][hapmap];0.92[EUR][1000 genomes]
rs12509881	0.85[AFR][1000 genomes]
rs13106939	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13115538	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13130042	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13138560	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13139957	0.84[AMR][1000 genomes]
rs13140820	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13141292	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13141832	0.94[EUR][1000 genomes]
rs13146661	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13149911	1.00[CEU][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1472964	0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1509619	0.91[CEU][hapmap];0.90[CHB][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17022181	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17022183	0.91[CEU][hapmap];0.90[CHB][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17022258	0.87[CEU][hapmap]
rs28427211	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28450092	0.86[AFR][1000 genomes]
rs28496184	0.85[AFR][1000 genomes]
rs28551772	0.85[AFR][1000 genomes]
rs28864517	0.86[AFR][1000 genomes]
rs34051091	0.91[EUR][1000 genomes]
rs34618938	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34752274	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35070714	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35271777	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35288991	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35501794	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35575650	0.92[EUR][1000 genomes]
rs35627971	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35965331	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4467574	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs4552469	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs4599420	0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs62316513	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532507	0.87[EUR][1000 genomes]
rs6532509	0.82[AFR][1000 genomes]
rs6837341	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838436	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6840605	0.82[AFR][1000 genomes]
rs6840866	0.82[AFR][1000 genomes]
rs71601231	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7667095	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7667584	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7677261	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7677422	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7684060	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs7693277	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs925282	0.95[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs925283	0.94[ASW][hapmap];0.95[CEU][hapmap];0.92[GIH][hapmap];0.86[LWK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs955735	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs997902	0.96[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs997903	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95683000-95703600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:95686200-95695000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:95694600-95696000	Flanking Active TSS	A549	lung
4	chr4:95694800-95695600	Enhancers	Stomach Mucosa	stomach

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