Variant report

Variant	rs4431674
Chromosome Location	chr9:21822483-21822484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10118262	0.81[AMR][1000 genomes]
rs10738599	0.83[AMR][1000 genomes]
rs10757253	0.83[AMR][1000 genomes]
rs10757254	0.83[AMR][1000 genomes]
rs10757255	0.83[AMR][1000 genomes]
rs10811613	0.83[AMR][1000 genomes]
rs10811617	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10811618	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10965122	0.83[AMR][1000 genomes]
rs10965127	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12344842	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1335512	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1345022	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1414228	0.83[AMR][1000 genomes]
rs1542074	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1542075	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1542076	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2152272	0.83[AMR][1000 genomes]
rs2152273	0.82[AMR][1000 genomes]
rs2184551	0.83[AMR][1000 genomes]
rs3849929	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3927737	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3927738	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3928894	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6475576	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6475578	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6475579	0.83[AMR][1000 genomes]
rs6475585	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7018772	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7021012	0.83[AMR][1000 genomes]
rs7022856	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7023474	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7023680	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7024027	0.83[AMR][1000 genomes]
rs7027989	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7033503	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7037577	0.83[AMR][1000 genomes]
rs7038708	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7045768	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72691561	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691562	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691563	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72691564	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7846749	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7850446	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7852450	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7856941	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7866540	0.80[EUR][1000 genomes]
rs7866787	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7866885	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs869329	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs869330	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs871024	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs935053	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs935055	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9886831	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21809200-21836800	Weak transcription	Small Intestine	intestine
4	chr9:21814000-21831800	Weak transcription	Fetal Heart	heart
5	chr9:21814400-21831800	Weak transcription	Stomach Mucosa	stomach
6	chr9:21814400-21837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:21816400-21836600	Weak transcription	Psoas Muscle	Psoas
9	chr9:21816600-21833800	Weak transcription	Fetal Brain Male	brain
10	chr9:21816800-21833200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:21817400-21829000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:21817400-21830200	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:21817400-21837800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:21817800-21840600	Weak transcription	Colonic Mucosa	Colon
15	chr9:21818400-21824200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:21818400-21824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:21818400-21824400	Weak transcription	Aorta	Aorta
18	chr9:21818400-21824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:21818600-21824400	Weak transcription	Esophagus	oesophagus
20	chr9:21818600-21824400	Weak transcription	Pancreas	Pancrea
21	chr9:21818600-21840800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr9:21818800-21824200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:21818800-21824400	Weak transcription	Gastric	stomach
24	chr9:21818800-21824400	Weak transcription	Lung	lung
25	chr9:21818800-21824600	Weak transcription	Spleen	Spleen
26	chr9:21818800-21840400	Weak transcription	Right Ventricle	heart
27	chr9:21819000-21824800	Weak transcription	GM12878-XiMat	blood
28	chr9:21819000-21828800	Weak transcription	HSMMtube	muscle
29	chr9:21819000-21831400	Weak transcription	NHLF	lung
30	chr9:21819200-21825000	Weak transcription	Primary T cells from cord blood	blood
31	chr9:21819200-21825000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr9:21819200-21825000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr9:21819200-21825000	Weak transcription	Dnd41	blood
34	chr9:21819200-21825000	Weak transcription	HepG2	liver
35	chr9:21819200-21825200	Weak transcription	Hela-S3	cervix
36	chr9:21819200-21825200	Weak transcription	HMEC	breast
37	chr9:21819200-21825200	Weak transcription	HSMM	muscle
38	chr9:21819200-21825400	Weak transcription	Primary B cells from cord blood	blood
39	chr9:21819200-21825600	Weak transcription	NHEK	skin
40	chr9:21819200-21827200	Weak transcription	NHDF-Ad	bronchial
41	chr9:21819200-21828800	Weak transcription	Osteobl	bone
42	chr9:21819400-21823800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr9:21819400-21824000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr9:21819400-21824000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr9:21819400-21824000	Weak transcription	Fetal Stomach	stomach
46	chr9:21819400-21824000	Weak transcription	Left Ventricle	heart
47	chr9:21819400-21824200	Weak transcription	Fetal Intestine Small	intestine
48	chr9:21819400-21824200	Weak transcription	Fetal Lung	lung
49	chr9:21819400-21824400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:21819400-21824400	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links