Variant report

Variant	rs10811618
Chromosome Location	chr9:21790142-21790143
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:21586208..21586976-chr9:21789155..21790210,3	MCF-7	breast:
2	chr9:21465480..21466871-chr9:21788898..21790282,6	MCF-7	breast:
3	chr9:21491433..21492444-chr9:21789127..21790263,7	MCF-7	breast:
4	chr9:21586444..21586977-chr9:21789496..21790440,2	MCF-7	breast:
5	chr9:21788671..21790825-chr9:21801157..21804087,2	MCF-7	breast:
6	chr9:21465639..21466595-chr9:21789434..21790168,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000099810	Chromatin interaction
ENSG00000264545	Chromatin interaction

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs10118262	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10119658	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10738595	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10738597	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10738599	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10757238	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757239	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757240	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757241	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757242	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757243	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10757245	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757246	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757247	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10757250	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10757251	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10757252	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10757253	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10757254	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10757255	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10811600	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10811601	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10811602	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10811604	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10811605	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10811613	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10811615	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10811617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10965122	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10965127	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12344842	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335502	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1335505	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1335506	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1335507	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1335508	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1335512	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1345022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1345025	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1345027	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1372057	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1372058	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1372059	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414228	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1414229	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1414236	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414237	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414238	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414240	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414241	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414242	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414244	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1414245	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414246	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414247	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414248	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414249	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414250	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414251	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414252	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414256	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1414257	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1440993	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1542074	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1542075	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1542076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1556696	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1556697	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1561651	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1561652	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1932237	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1965153	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2027162	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2027163	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2043991	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2119466	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2119467	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2152272	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2152273	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2165411	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2184551	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2218220	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2891159	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2891160	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3849929	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3927737	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3928894	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4300088	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4350062	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4352937	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4364717	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4384075	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4431674	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4548267	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4636294	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6475564	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6475566	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6475568	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6475569	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6475571	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6475572	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6475574	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6475576	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475578	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475579	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6475585	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7018772	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7019601	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7021012	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7021538	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7022856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7023299	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7023474	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023680	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7024027	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7027989	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7028913	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7029040	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7029166	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7029274	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7033503	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7036249	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7036257	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7037577	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7038708	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7043827	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7045768	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72691561	0.92[ASN][1000 genomes]
rs72691562	0.92[ASN][1000 genomes]
rs72691563	0.93[ASN][1000 genomes]
rs72691564	0.93[ASN][1000 genomes]
rs7846749	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7850446	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7852450	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7852710	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7852900	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7853131	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7854018	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7854222	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7855242	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7856941	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7858991	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7866540	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7866787	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7866885	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7871345	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7874319	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs869329	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs869330	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs871024	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9298823	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9298824	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9298825	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs935053	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs935055	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs950770	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs958219	0.81[EUR][1000 genomes]
rs9644821	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9644858	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9886831	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21788200-21790200	Enhancers	Hela-S3	cervix
2	chr9:21788200-21790200	Enhancers	NHEK	skin
3	chr9:21790000-21790200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:21790000-21790200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:21790000-21790200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:21790000-21790200	Enhancers	A549	lung
7	chr9:21790000-21790200	Enhancers	Dnd41	blood
8	chr9:21790000-21790200	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links