Variant report

Variant	rs958219
Chromosome Location	chr9:21784225-21784226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10114559	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs10118262	0.80[EUR][1000 genomes]
rs10119568	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10119693	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10121899	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10738598	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10738599	0.82[EUR][1000 genomes]
rs10738601	0.86[ASN][1000 genomes]
rs10757253	0.82[EUR][1000 genomes]
rs10757254	0.82[EUR][1000 genomes]
rs10757255	0.82[EUR][1000 genomes]
rs10757257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10811613	0.82[EUR][1000 genomes]
rs10811618	0.81[EUR][1000 genomes]
rs10811625	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10811629	1.00[CHB][hapmap]
rs10965122	0.82[EUR][1000 genomes]
rs10965127	0.84[EUR][1000 genomes]
rs10965128	0.90[ASN][1000 genomes]
rs10965133	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10965134	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10965135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10965141	0.84[ASN][1000 genomes]
rs10965143	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10965144	0.95[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10965145	0.82[ASN][1000 genomes]
rs10965153	1.00[CHB][hapmap]
rs12344842	0.80[EUR][1000 genomes]
rs1335512	0.83[EUR][1000 genomes]
rs1341866	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1345020	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1345022	0.82[EUR][1000 genomes]
rs1345023	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1345024	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1414228	0.82[EUR][1000 genomes]
rs1414243	0.91[CHB][hapmap]
rs1542074	0.82[EUR][1000 genomes]
rs1542075	0.81[EUR][1000 genomes]
rs2152272	0.82[EUR][1000 genomes]
rs2152273	0.81[EUR][1000 genomes]
rs2165409	0.91[CHB][hapmap]
rs2184551	0.82[EUR][1000 genomes]
rs3849929	0.84[EUR][1000 genomes]
rs3900787	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs3922992	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4265275	0.81[AMR][1000 genomes]
rs4615669	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs58377678	0.88[ASN][1000 genomes]
rs6475576	0.84[EUR][1000 genomes]
rs6475578	0.83[EUR][1000 genomes]
rs6475579	0.82[EUR][1000 genomes]
rs7018772	0.82[EUR][1000 genomes]
rs7021012	0.82[EUR][1000 genomes]
rs7022754	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7022856	0.82[EUR][1000 genomes]
rs7023329	1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7023954	1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7024027	0.82[EUR][1000 genomes]
rs7029036	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7033879	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7037577	0.82[EUR][1000 genomes]
rs7038523	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7038708	0.82[EUR][1000 genomes]
rs7045768	0.84[EUR][1000 genomes]
rs7049092	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7846749	0.82[EUR][1000 genomes]
rs7850446	0.84[EUR][1000 genomes]
rs7852710	0.80[EUR][1000 genomes]
rs7856941	0.83[EUR][1000 genomes]
rs7863942	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7866540	0.83[EUR][1000 genomes]
rs7866787	0.83[EUR][1000 genomes]
rs7866885	0.83[EUR][1000 genomes]
rs935053	0.82[EUR][1000 genomes]
rs9886831	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv1016579	chr9:21756285-21785335	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21779600-21788800	Weak transcription	NHDF-Ad	bronchial
2	chr9:21779800-21788600	Weak transcription	NH-A	brain
3	chr9:21780200-21788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:21782600-21785000	Weak transcription	NHEK	skin
5	chr9:21782600-21785200	Weak transcription	HMEC	breast
6	chr9:21782600-21787600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:21782600-21787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:21782600-21788000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:21783400-21785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:21783400-21788200	Weak transcription	Hela-S3	cervix

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