Variant report

Variant	rs10965128
Chromosome Location	chr9:21780797-21780798
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10114559	0.89[ASN][1000 genomes]
rs10119568	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10119693	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10121449	0.88[ASN][1000 genomes]
rs10121899	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738598	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10738601	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10757257	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10811623	0.85[ASN][1000 genomes]
rs10811625	0.88[ASN][1000 genomes]
rs10811626	0.88[ASN][1000 genomes]
rs10811629	0.82[ASN][1000 genomes]
rs10965133	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10965134	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965135	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965141	0.92[ASN][1000 genomes]
rs10965143	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10965144	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10965145	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10965153	0.81[ASN][1000 genomes]
rs11523031	0.82[ASN][1000 genomes]
rs1335510	0.80[EUR][1000 genomes]
rs1335511	0.80[EUR][1000 genomes]
rs1341866	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1345020	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1345023	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1345024	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561650	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3900787	0.88[ASN][1000 genomes]
rs3922992	0.88[ASN][1000 genomes]
rs4265275	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4615669	0.88[ASN][1000 genomes]
rs4977567	0.82[ASN][1000 genomes]
rs4977733	0.82[ASN][1000 genomes]
rs58377678	0.82[ASN][1000 genomes]
rs7022754	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023329	0.82[ASN][1000 genomes]
rs7023954	0.89[ASN][1000 genomes]
rs7029036	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7033879	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7038523	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7049092	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7863090	0.88[ASN][1000 genomes]
rs7863942	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7868783	0.82[ASN][1000 genomes]
rs958219	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv1016579	chr9:21756285-21785335	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21778400-21782200	Weak transcription	Stomach Mucosa	stomach
2	chr9:21778400-21782400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:21779000-21781000	Weak transcription	NHEK	skin
4	chr9:21779000-21781400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:21779600-21781400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:21779600-21781400	Weak transcription	Hela-S3	cervix
7	chr9:21779600-21788800	Weak transcription	NHDF-Ad	bronchial
8	chr9:21779800-21781400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:21779800-21782200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:21779800-21788600	Weak transcription	NH-A	brain
11	chr9:21780000-21781200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:21780000-21781400	Weak transcription	HMEC	breast
13	chr9:21780200-21781600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:21780200-21788600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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