Variant report

Variant	rs10965133
Chromosome Location	chr9:21788656-21788657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10114559	0.91[CHB][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10119568	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10119693	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10121449	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10121899	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10738598	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10738601	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757244	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10757257	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10811597	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10811598	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10811603	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10811608	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10811623	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10811625	0.88[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10811626	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10811629	0.91[CHB][hapmap]
rs10965117	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10965128	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10965134	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10965135	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965141	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10965143	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10965144	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10965145	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10965153	0.91[CHB][hapmap]
rs12555601	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13298275	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1335503	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1335510	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1335511	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1341866	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1345020	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1345023	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1345024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1414243	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1414253	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1561650	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2165409	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3900787	0.88[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3922992	0.89[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4265275	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4364717	0.85[CEU][hapmap]
rs4615669	0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7022754	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7023329	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs7023954	0.88[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7029036	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7033879	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7038523	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7049092	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7863090	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7863942	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs958219	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21779600-21788800	Weak transcription	NHDF-Ad	bronchial
2	chr9:21786800-21789200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:21787600-21789200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:21787800-21789000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:21787800-21789800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21788200-21789800	Enhancers	HMEC	breast
7	chr9:21788200-21790200	Enhancers	Hela-S3	cervix
8	chr9:21788200-21790200	Enhancers	NHEK	skin
9	chr9:21788400-21788800	Enhancers	Osteobl	bone
10	chr9:21788600-21788800	Enhancers	Fetal Intestine Large	intestine
11	chr9:21788600-21788800	Flanking Active TSS	Fetal Intestine Small	intestine
12	chr9:21788600-21789000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:21788600-21789000	Active TSS	Stomach Mucosa	stomach
14	chr9:21788600-21789400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:21788600-21789400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:21788600-21789600	Flanking Active TSS	A549	lung
17	chr9:21788600-21789800	Enhancers	NH-A	brain

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