Variant report

Variant	rs7863090
Chromosome Location	chr9:21824882-21824883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10114559	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10119568	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10119693	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10121449	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121899	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738598	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10738601	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10757257	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10811623	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10811625	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811626	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10811629	0.94[ASN][1000 genomes]
rs10965128	0.88[ASN][1000 genomes]
rs10965133	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10965134	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10965135	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10965141	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965143	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10965144	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10965145	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10965153	0.91[ASN][1000 genomes]
rs11523031	0.92[ASN][1000 genomes]
rs11532907	0.85[ASN][1000 genomes]
rs1341866	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1345020	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1345023	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1345024	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3900787	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3922992	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4265275	0.86[EUR][1000 genomes]
rs4615669	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4977567	0.91[ASN][1000 genomes]
rs4977733	0.94[ASN][1000 genomes]
rs58377678	0.90[ASN][1000 genomes]
rs7022754	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7023329	0.91[ASN][1000 genomes]
rs7023954	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7029036	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7033879	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7038523	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7049092	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7863942	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7868783	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:21809200-21836800	Weak transcription	Small Intestine	intestine
4	chr9:21814000-21831800	Weak transcription	Fetal Heart	heart
5	chr9:21814400-21831800	Weak transcription	Stomach Mucosa	stomach
6	chr9:21814400-21837400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr9:21814400-21845200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr9:21816400-21836600	Weak transcription	Psoas Muscle	Psoas
9	chr9:21816600-21833800	Weak transcription	Fetal Brain Male	brain
10	chr9:21816800-21833200	Weak transcription	Brain Angular Gyrus	brain
11	chr9:21817400-21829000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:21817400-21830200	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:21817400-21837800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:21817800-21840600	Weak transcription	Colonic Mucosa	Colon
15	chr9:21818600-21840800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:21818800-21840400	Weak transcription	Right Ventricle	heart
17	chr9:21819000-21828800	Weak transcription	HSMMtube	muscle
18	chr9:21819000-21831400	Weak transcription	NHLF	lung
19	chr9:21819200-21825000	Weak transcription	Primary T cells from cord blood	blood
20	chr9:21819200-21825000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr9:21819200-21825000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:21819200-21825000	Weak transcription	Dnd41	blood
23	chr9:21819200-21825000	Weak transcription	HepG2	liver
24	chr9:21819200-21825200	Weak transcription	Hela-S3	cervix
25	chr9:21819200-21825200	Weak transcription	HMEC	breast
26	chr9:21819200-21825200	Weak transcription	HSMM	muscle
27	chr9:21819200-21825400	Weak transcription	Primary B cells from cord blood	blood
28	chr9:21819200-21825600	Weak transcription	NHEK	skin
29	chr9:21819200-21827200	Weak transcription	NHDF-Ad	bronchial
30	chr9:21819200-21828800	Weak transcription	Osteobl	bone
31	chr9:21819400-21825000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr9:21819400-21825000	Weak transcription	Brain Hippocampus Middle	brain
33	chr9:21819400-21825600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr9:21819400-21827400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr9:21819400-21827600	Weak transcription	NH-A	brain
36	chr9:21819400-21829000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr9:21819400-21829200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:21819400-21830800	Weak transcription	HUVEC	blood vessel
39	chr9:21819400-21831400	Weak transcription	Placenta	Placenta
40	chr9:21819400-21831800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr9:21819400-21833800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr9:21819400-21840400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr9:21819400-21841600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr9:21819600-21825000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr9:21819600-21825200	Weak transcription	Fetal Kidney	kidney
46	chr9:21819600-21830600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:21819800-21825000	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr9:21819800-21832400	Weak transcription	Brain Anterior Caudate	brain
49	chr9:21820000-21825400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:21821200-21825000	Weak transcription	Fetal Intestine Large	intestine

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