Variant report

Variant	rs10119693
Chromosome Location	chr9:21796791-21796792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21796497..21798731-chr9:21800652..21802433,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10114559	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10119568	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10121449	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10121899	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10738598	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10738601	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10757244	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10757257	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10811597	0.84[EUR][1000 genomes]
rs10811598	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10811603	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10811608	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10811623	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10811625	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10811626	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10811629	0.84[ASN][1000 genomes]
rs10965117	0.84[EUR][1000 genomes]
rs10965128	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965133	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10965134	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965135	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10965141	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10965143	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965144	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965145	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965153	0.83[ASN][1000 genomes]
rs11523031	0.84[ASN][1000 genomes]
rs12555601	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13298275	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1335503	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1335510	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1335511	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1341866	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1345020	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1345023	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1345024	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1414243	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1414253	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1561650	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2165409	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3900787	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3922992	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4265275	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4364717	0.81[EUR][1000 genomes]
rs4615669	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4977567	0.83[ASN][1000 genomes]
rs4977733	0.84[ASN][1000 genomes]
rs58377678	0.84[ASN][1000 genomes]
rs7022754	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023329	0.84[ASN][1000 genomes]
rs7023954	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7029036	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7033879	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7038523	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7049092	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7863090	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7863942	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7868783	0.84[ASN][1000 genomes]
rs958219	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21790200-21801000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:21790200-21801200	Weak transcription	NHEK	skin
3	chr9:21796600-21796800	Enhancers	Placenta	Placenta
4	chr9:21796600-21796800	Flanking Active TSS	A549	lung
5	chr9:21796600-21796800	Enhancers	NHDF-Ad	bronchial
6	chr9:21796600-21797000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:21796600-21797200	Enhancers	NH-A	brain
8	chr9:21796600-21797400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr9:21796600-21797400	Bivalent Enhancer	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links