Variant report

Variant	rs10965135
Chromosome Location	chr9:21789580-21789581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:8215310..8215810-chr9:21789446..21790131,2	MCF-7	breast:
2	chr9:21586208..21586976-chr9:21789155..21790210,3	MCF-7	breast:
3	chr9:21465480..21466871-chr9:21788898..21790282,6	MCF-7	breast:
4	chr9:21491433..21492444-chr9:21789127..21790263,7	MCF-7	breast:
5	chr9:21492643..21493283-chr9:21789425..21789929,2	MCF-7	breast:
6	chr9:21318068..21318780-chr9:21789413..21789937,2	MCF-7	breast:
7	chr9:21586444..21586977-chr9:21789496..21790440,2	MCF-7	breast:
8	chr9:21788671..21790825-chr9:21801157..21804087,2	MCF-7	breast:
9	chr9:21709315..21710109-chr9:21789136..21789898,2	MCF-7	breast:
10	chr9:21709125..21709738-chr9:21789173..21789997,3	MCF-7	breast:
11	chr9:21465639..21466595-chr9:21789434..21790168,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000099810	Chromatin interaction
ENSG00000264545	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10114559	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs10119568	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10119693	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10121449	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10121899	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10738598	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10738601	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10757244	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10757257	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10811597	0.82[AMR][1000 genomes]
rs10811598	0.86[AMR][1000 genomes]
rs10811603	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10811608	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10811623	0.87[ASN][1000 genomes]
rs10811625	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10811626	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10811629	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs10965117	0.83[AMR][1000 genomes]
rs10965128	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965133	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10965141	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10965143	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10965144	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10965145	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10965153	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs11523031	0.82[ASN][1000 genomes]
rs12555601	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13298275	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1335503	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1335510	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1335511	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1341866	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1345020	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1345023	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1345024	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1414243	0.92[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1414253	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1561650	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2165409	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3900787	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3922992	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4265275	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4364717	0.85[CEU][hapmap]
rs4615669	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.88[ASN][1000 genomes]
rs4977567	0.81[ASN][1000 genomes]
rs4977733	0.82[ASN][1000 genomes]
rs58377678	0.82[ASN][1000 genomes]
rs7022754	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7023329	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7023954	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7029036	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7033879	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7038523	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7049092	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7863090	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7863942	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7868783	0.82[ASN][1000 genomes]
rs958219	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21787800-21789800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:21788200-21789800	Enhancers	HMEC	breast
3	chr9:21788200-21790200	Enhancers	Hela-S3	cervix
4	chr9:21788200-21790200	Enhancers	NHEK	skin
5	chr9:21788600-21789600	Flanking Active TSS	A549	lung
6	chr9:21788600-21789800	Enhancers	NH-A	brain
7	chr9:21788800-21789600	Enhancers	NHDF-Ad	bronchial
8	chr9:21789000-21789600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:21789000-21789600	Weak transcription	NHLF	lung
10	chr9:21789000-21789600	Enhancers	Osteobl	bone
11	chr9:21789000-21790000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:21789200-21789600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:21789200-21789800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:21789400-21789600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:21789400-21789600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:21789400-21790000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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