Variant report

Variant	rs44338
Chromosome Location	chr3:34834586-34834587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1522966	0.87[ASN][1000 genomes]
rs1916227	0.87[ASN][1000 genomes]
rs475330	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490563	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs511922	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523378	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523810	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525673	0.87[ASN][1000 genomes]
rs539992	0.94[ASN][1000 genomes]
rs554650	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575331	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs589922	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs602928	0.90[ASN][1000 genomes]
rs605270	0.87[ASN][1000 genomes]
rs684871	0.81[ASN][1000 genomes]
rs73055987	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7623820	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1010956	chr3:34833573-34878681	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34826200-34835200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:34834000-34834800	Enhancers	Fetal Brain Male	brain
3	chr3:34834000-34835200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:34834000-34836400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:34834200-34836400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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