Variant report
| Variant | rs523378 |
|---|---|
| Chromosome Location | chr3:34839032-34839033 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1522966 | 0.87[ASN][1000 genomes] |
| rs1522970 | 0.82[AFR][1000 genomes] |
| rs1522972 | 0.82[AFR][1000 genomes] |
| rs1916227 | 0.87[ASN][1000 genomes] |
| rs44338 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs475330 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs490563 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs511922 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs521098 | 0.82[AFR][1000 genomes] |
| rs522010 | 0.82[AFR][1000 genomes] |
| rs523810 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs525673 | 0.87[ASN][1000 genomes] |
| rs539992 | 0.94[ASN][1000 genomes] |
| rs554650 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs565540 | 0.82[AFR][1000 genomes] |
| rs575331 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs589922 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs602928 | 0.90[ASN][1000 genomes] |
| rs605270 | 0.87[ASN][1000 genomes] |
| rs631429 | 0.82[AFR][1000 genomes] |
| rs633214 | 0.82[AFR][1000 genomes] |
| rs659668 | 0.82[AFR][1000 genomes] |
| rs659709 | 0.82[AFR][1000 genomes] |
| rs662338 | 0.82[AFR][1000 genomes] |
| rs671603 | 0.82[AFR][1000 genomes] |
| rs684871 | 0.81[ASN][1000 genomes] |
| rs73055987 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7623820 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834654 | chr3:34747802-34916657 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834655 | chr3:34752929-34898824 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv3415700 | chr3:34806371-34914306 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1010956 | chr3:34833573-34878681 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3408584 | chr3:34838963-34881489 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34835400-34841800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr3:34837600-34839400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 3 | chr3:34838400-34839400 | Enhancers | Dnd41 | blood |
