Variant report

Variant	rs490563
Chromosome Location	chr3:34823877-34823878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs44338	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475330	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs511922	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs523378	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs523810	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs539992	0.93[ASN][1000 genomes]
rs554650	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs575331	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs589922	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs602928	0.86[ASN][1000 genomes]
rs73055987	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7623820	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34818000-34824200	Weak transcription	Aorta	Aorta
2	chr3:34823000-34824200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:34823200-34824200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:34823200-34824400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:34823400-34824000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:34823800-34824600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:34823800-34826200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:34823800-34826800	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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