Variant report

Variant	rs4437470
Chromosome Location	chr6:53583782-53583783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10452610	0.92[ASN][1000 genomes]
rs13220665	1.00[JPT][hapmap]
rs2745462	1.00[JPT][hapmap]
rs34069307	0.92[ASN][1000 genomes]
rs34274914	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35360324	0.92[ASN][1000 genomes]
rs35610624	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35756855	0.84[AMR][1000 genomes]
rs3813849	1.00[JPT][hapmap]
rs4128134	0.92[ASN][1000 genomes]
rs4489155	1.00[JPT][hapmap]
rs4715424	1.00[JPT][hapmap]
rs6899886	0.92[ASN][1000 genomes]
rs6920831	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759946	1.00[JPT][hapmap]
rs9382234	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2421836	chr6:53581398-53591120	Bivalent Enhancer Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53582000-53583800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr6:53582200-53583800	Enhancers	Fetal Intestine Large	intestine
3	chr6:53582400-53584600	Enhancers	Fetal Intestine Small	intestine
4	chr6:53582600-53588400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:53582800-53583800	Enhancers	NHEK	skin
6	chr6:53582800-53588400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:53583000-53584200	Enhancers	Adipose Nuclei	Adipose
8	chr6:53583000-53590800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:53583400-53584400	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:53583400-53584600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:53583600-53584000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:53583600-53584000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:53583600-53584200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:53583600-53584200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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