Variant report

Variant	rs3813849
Chromosome Location	chr6:53659112-53659113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:178)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:178 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr6:53659093-53659732	GM12878	blood:	n/a	n/a
2	MAX	chr6:53658055-53660083	A549	lung:	n/a	n/a
3	MAX	chr6:53657995-53660610	ECC-1	luminal epithelium:	n/a	chr6:53660589-53660599
4	GABPA	chr6:53659087-53659836	A549	lung:	n/a	n/a
5	TCF12	chr6:53659072-53660088	ECC-1	luminal epithelium:	n/a	n/a
6	TAF1	chr6:53658815-53659126	H1-hESC	embryonic stem cell:	n/a	n/a
7	SIN3AK20	chr6:53658844-53659455	HepG2	liver:	n/a	n/a
8	POLR2A	chr6:53658319-53660088	GM12878	blood:	n/a	n/a
9	RAD21	chr6:53658987-53659908	ECC-1	luminal epithelium:	n/a	chr6:53659267-53659276
10	POLR2A	chr6:53658017-53660323	H1-hESC	embryonic stem cell:	n/a	n/a
11	SP1	chr6:53658988-53660003	A549	lung:	n/a	n/a
12	ZNF263	chr6:53658118-53660328	HEK293-T-REx	kidney:	n/a	chr6:53659177-53659186
13	HA-E2F1	chr6:53658249-53661314	MCF-7	breast:	n/a	chr6:53658580-53658592 chr6:53660791-53660806
14	RAD21	chr6:53658986-53659455	HepG2	liver:	n/a	chr6:53659267-53659276
15	KAP1	chr6:53659081-53659699	U2OS	brain:	n/a	n/a
16	MAX	chr6:53657848-53661452	HCT-116	colon:	n/a	chr6:53660589-53660599
17	CTCF	chr6:53659100-53659471	H1-hESC	embryonic stem cell:	n/a	n/a
18	TBP	chr6:53658870-53660561	H1-hESC	embryonic stem cell:	n/a	n/a
19	MYC	chr6:53658968-53659867	MCF10A-Er-Src	breast:	n/a	n/a
20	CTCF	chr6:53659100-53659250	HFF	foreskin:	n/a	n/a
21	RAD21	chr6:53658916-53660298	H1-hESC	embryonic stem cell:	n/a	chr6:53659267-53659276
22	TEAD4	chr6:53658886-53659884	HepG2	liver:	n/a	n/a
23	POLR2A	chr6:53659104-53660007	Hela-S3	cervix:	n/a	n/a
24	GABPA	chr6:53658939-53659968	HL-60	blood:	n/a	n/a
25	TAF1	chr6:53659076-53660060	ECC-1	luminal epithelium:	n/a	n/a
26	POLR2A	chr6:53657931-53660001	HepG2	liver:	n/a	n/a
27	POLR2A	chr6:53658082-53659997	MCF10A-Er-Src	breast:	n/a	n/a
28	POLR2A	chr6:53658888-53660073	A549	lung:	n/a	n/a
29	HDAC2	chr6:53658364-53660221	MCF-7	breast:	n/a	chr6:53658736-53658744
30	CTCF	chr6:53659065-53659625	IMR90	lung:	n/a	n/a
31	NRF1	chr6:53658947-53660172	SK-N-SH	brain:	n/a	n/a
32	RAD21	chr6:53659013-53660236	HepG2	liver:	n/a	chr6:53659267-53659276
33	POLR2A	chr6:53658796-53660424	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr6:53658417-53660311	GM18526	blood:	n/a	n/a
35	ZNF143	chr6:53658945-53660247	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chr6:53659060-53659210	A549	lung:	n/a	n/a
37	SMC3	chr6:53658929-53660419	Hela-S3	cervix:	n/a	n/a
38	HEY1	chr6:53657860-53660137	HepG2	liver:	n/a	n/a
39	CHD2	chr6:53658968-53660127	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr6:53659032-53659936	PANC-1	pancreas:	n/a	n/a
41	ZNF143	chr6:53658869-53659869	GM12878	blood:	n/a	n/a
42	MAZ	chr6:53658285-53661262	IMR90	lung:	n/a	chr6:53660589-53660599
43	POLR2A	chr6:53658221-53660343	Raji	blood:	n/a	n/a
44	MYBL2	chr6:53657854-53660234	HepG2	liver:	n/a	n/a
45	CTCF	chr6:53659050-53659834	GM12878	blood:	n/a	n/a
46	POLR2A	chr6:53658978-53659939	U87	brain:	n/a	n/a
47	ZEB1	chr6:53657986-53661733	HepG2	liver:	n/a	chr6:53660227-53660234 chr6:53660527-53660534 chr6:53660524-53660535
48	RAD21	chr6:53658973-53659797	MCF-7	breast:	n/a	chr6:53659267-53659276
49	POLR2A	chr6:53658096-53660034	ECC-1	luminal epithelium:	n/a	n/a
50	REST	chr6:53658998-53659598	A549	lung:	n/a	chr6:53659471-53659484

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:53659077-53659127	K562	blood:	n/a
2	chr6:53659077-53659127	SAEC	small airway:	n/a
3	chr6:53659077-53659127	BJ	skin:	n/a
4	chr6:53659077-53659127	AG09309	skin:	n/a
5	chr6:53659077-53659127	AG09319	gingival:	n/a
6	chr6:53659077-53659127	GM06990	blood:	n/a
7	chr6:53659077-53659127	HL-60	blood:	n/a
8	chr6:53659077-53659127	PFSK-1	brain:	n/a
9	chr6:53659077-53659127	NT2-D1	testis:	n/a
10	chr6:53659077-53659127	HMEC	breast:	n/a
11	chr6:53659077-53659127	HRCEpiC	kidney:	n/a
12	chr6:53659077-53659127	HCT-116	colon:	n/a
13	chr6:53659077-53659127	HCM	heart:	n/a
14	chr6:53659077-53659127	LNCaP	prostate:	n/a
15	chr6:53659077-53659127	ECC-1	luminal epithelium:	n/a
16	chr6:53659077-53659127	HCF	heart:	n/a
17	chr6:53659077-53659127	BE2_C	brain:	n/a
18	chr6:53659077-53659127	SK-N-SH	brain:	n/a
19	chr6:53659077-53659127	HPAEpiC	pulmonary alveolar:	n/a
20	chr6:53659077-53659127	SKMC	muscle:	n/a
21	chr6:53659077-53659127	T-47D	breast:	n/a
22	chr6:53659077-53659127	GM12892	blood:	n/a
23	chr6:53659077-53659127	AG04450	lung:	fetal
24	chr6:53659077-53659127	GM12878	blood:	n/a
25	chr6:53659077-53659127	HEK293	kidney:	embryo
26	chr6:53659077-53659127	SK-N-MC	brain:	n/a
27	chr6:53659077-53659127	NH-A	brain:	n/a
28	chr6:53659077-53659127	Jurkat	blood:	n/a
29	chr6:53659077-53659127	HUVEC	blood vessel:	n/a
30	chr6:53659077-53659127	AoSMC	blood vessel:	n/a
31	chr6:53659077-53659127	NB4	blood:	n/a
32	chr6:53659077-53659127	H1-hESC	embryonic stem cell:	embryo
33	chr6:53659077-53659127	GM12891	blood:	n/a
34	chr6:53659077-53659127	ProgFib	skin:	n/a
35	chr6:53659077-53659127	U87	brain:	n/a
36	chr6:53659077-53659127	MCF10A-Er-Src	breast:	n/a
37	chr6:53659077-53659127	HIPEpiC	eye:	n/a
38	chr6:53659077-53659127	CMK	blood:	n/a
39	chr6:53659077-53659127	Hepatocyte	liver:	n/a
40	chr6:53659077-53659127	HNPCEpiC	eye:	n/a
41	chr6:53659077-53659127	MCF-7	breast:	n/a
42	chr6:53659077-53659127	RPTEC	kidney:	n/a
43	chr6:53659077-53659127	HCPEpiC	choroid plexus:	n/a
44	chr6:53659077-53659127	PrEC	prostate:	n/a
45	chr6:53659077-53659127	Caco-2	colon:	n/a
46	chr6:53659077-53659127	NHDF-neo	bronchial:	n/a
47	chr6:53659077-53659127	GM19239	blood:	n/a
48	chr6:53659077-53659127	NHBE	bronchial:	n/a
49	chr6:53659077-53659127	HepG2	liver:	n/a
50	chr6:53659077-53659127	AG04449	skin:	fetal

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:53656949..53662173-chr6:53781368..53784554,5	MCF-7	breast:
2	chr6:53610265..53615014-chr6:53656858..53662694,9	MCF-7	breast:

No data

Variant related genes	Relation type
LRRC1	TF binding region
ENSG00000228614	TF binding region
LRRC1	CpG island
ENSG00000228614	CpG island
ENSG00000227885	Chromatin interaction
ENSG00000137269	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10948779	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11755346	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13220665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2745462	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2820215	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2820216	0.90[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3000996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3000997	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3000999	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3001000	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3001001	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3001002	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3001009	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3001010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3003489	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3003491	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3003493	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs3003500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3003501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34165049	0.89[EUR][1000 genomes]
rs34861916	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34880762	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35389351	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35517171	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35756855	0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236113	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4236115	0.81[AMR][1000 genomes]
rs4265033	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4276502	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4286781	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4321822	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4326237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4336450	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4351263	0.94[CEU][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4382260	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4398733	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4437471	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4484515	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4489155	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4591854	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4615391	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4712048	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4712049	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4715424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715426	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59641455	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60035355	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458957	0.94[EUR][1000 genomes]
rs6458958	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6458959	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6458961	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6458962	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6458965	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6458966	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6458969	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6458971	0.81[EUR][1000 genomes]
rs6458972	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap]
rs6650996	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6899752	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901644	0.80[EUR][1000 genomes]
rs6920743	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6924025	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6925836	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926478	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6937901	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71555560	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742524	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs7739965	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7753504	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7754791	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7759946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762883	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7763081	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7763147	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7769893	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7774173	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9296719	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9296721	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9367544	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs9370235	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9370239	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9382234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382237	0.94[EUR][1000 genomes]
rs9382250	0.80[EUR][1000 genomes]
rs9395886	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1021506	chr6:53600338-53770482	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv3474747	chr6:53648744-53677210	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3474748	chr6:53648758-53677207	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53656800-53661200	Active TSS	Fetal Kidney	kidney
2	chr6:53657400-53661200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:53657400-53661400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:53657600-53659200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:53657600-53659200	Active TSS	Fetal Stomach	stomach
6	chr6:53657600-53659800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:53657600-53661000	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:53657600-53661000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:53657600-53661400	Active TSS	A549	lung
10	chr6:53657800-53659600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr6:53657800-53660200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr6:53657800-53661000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:53657800-53661600	Active TSS	Fetal Intestine Large	intestine
14	chr6:53657800-53662400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr6:53658000-53659200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr6:53658000-53659200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr6:53658000-53659200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr6:53658000-53659200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
19	chr6:53658000-53659200	Flanking Active TSS	NH-A	brain
20	chr6:53658000-53659400	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr6:53658000-53660200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr6:53658000-53660200	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr6:53658000-53660400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:53658000-53660400	Active TSS	Rectal Smooth Muscle	rectum
25	chr6:53658000-53660600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:53658000-53660600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:53658000-53660600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:53658000-53660800	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr6:53658000-53661000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr6:53658000-53661000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:53658000-53661400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:53658000-53661400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:53658000-53661400	Active TSS	Aorta	Aorta
34	chr6:53658000-53661400	Active TSS	Esophagus	oesophagus
35	chr6:53658000-53661600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:53658000-53661600	Active TSS	Fetal Intestine Small	intestine
37	chr6:53658000-53662000	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr6:53658200-53659200	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr6:53658200-53659200	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr6:53658200-53659200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr6:53658200-53659200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:53658200-53659200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr6:53658200-53659200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:53658200-53659200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:53658200-53659200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:53658200-53659200	Flanking Active TSS	Colonic Mucosa	Colon
47	chr6:53658200-53659200	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr6:53658200-53659200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr6:53658200-53659200	Flanking Active TSS	Dnd41	blood
50	chr6:53658200-53659200	Flanking Active TSS	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links