Variant report

Variant rs3001001
Chromosome Location chr6:53671821-53671822
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:53661400-53675600 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr6:53661400-53688200 Weak transcription Right Ventricle heart
3 chr6:53662600-53677600 Weak transcription Small Intestine intestine
4 chr6:53662800-53675400 Weak transcription Duodenum Mucosa Duodenum
5 chr6:53664800-53673400 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr6:53665000-53674800 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr6:53665000-53675600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr6:53667600-53678400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr6:53667800-53673600 Enhancers Brain Substantia Nigra brain
10 chr6:53668200-53680200 Weak transcription Fetal Stomach stomach
11 chr6:53668600-53674400 Enhancers Brain Hippocampus Middle brain
12 chr6:53668800-53674400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr6:53668800-53674800 Weak transcription Lung lung
14 chr6:53668800-53676000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr6:53668800-53676000 Weak transcription HUVEC blood vessel
16 chr6:53668800-53680000 Weak transcription Rectal Smooth Muscle rectum
17 chr6:53668800-53683800 Weak transcription Ovary ovary
18 chr6:53669600-53672200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr6:53669600-53674000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr6:53669800-53676800 Enhancers Cortex derived primary cultured neurospheres brain
21 chr6:53670000-53672200 Enhancers Brain Angular Gyrus brain
22 chr6:53670200-53672600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr6:53670200-53672800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr6:53670200-53675600 Weak transcription Left Ventricle heart
25 chr6:53670200-53678000 Weak transcription Aorta Aorta
26 chr6:53670200-53686400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr6:53670400-53675600 Weak transcription Fetal Intestine Large intestine
28 chr6:53670400-53676000 Weak transcription Colon Smooth Muscle Colon
29 chr6:53670600-53673200 Weak transcription Pancreatic Islets Pancreatic Islet
30 chr6:53670800-53672000 Enhancers HepG2 liver
31 chr6:53670800-53672600 Weak transcription Brain Cingulate Gyrus brain
32 chr6:53670800-53672800 Weak transcription Dnd41 blood
33 chr6:53670800-53673200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr6:53670800-53674600 Weak transcription NHEK skin
35 chr6:53670800-53675000 Weak transcription HMEC breast
36 chr6:53670800-53676000 Weak transcription Right Atrium heart
37 chr6:53670800-53680000 Weak transcription Stomach Smooth Muscle stomach
38 chr6:53670800-53693200 Weak transcription H9 Cell Line embryonic stem cell
39 chr6:53671000-53672600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
40 chr6:53671000-53672600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr6:53671000-53672600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr6:53671000-53673000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr6:53671000-53675600 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr6:53671000-53675600 Weak transcription H1 Cell Line embryonic stem cell
45 chr6:53671000-53675600 Weak transcription Esophagus oesophagus
46 chr6:53671000-53676400 Weak transcription ES-WA7 Cell Line embryonic stem cell
47 chr6:53671000-53680200 Weak transcription Breast Myoepithelial Primary Cells Breast
48 chr6:53671000-53683600 Weak transcription Placenta Amnion Placenta Amnion
49 chr6:53671200-53675600 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr6:53671200-53675800 Weak transcription HUES48 Cell Line embryonic stem cell

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