Variant report

Variant	rs4445895
Chromosome Location	chr16:82068897-82068898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:82068761-82069070	MCF10A-Er-Src	breast:	n/a	n/a
2	FOXA1	chr16:82068574-82068988	HepG2	liver:	n/a	n/a
3	ELF1	chr16:82068537-82069001	HepG2	liver:	n/a	chr16:82068645-82068656
4	E2F4	chr16:82068626-82068899	MCF10A-Er-Src	breast:	n/a	n/a
5	MAZ	chr16:82068601-82068927	HepG2	liver:	n/a	n/a
6	MAFF	chr16:82068550-82069090	HepG2	liver:	n/a	n/a
7	EP300	chr16:82068421-82069028	HepG2	liver:	n/a	n/a
8	FOXA2	chr16:82068564-82068929	HepG2	liver:	n/a	n/a
9	ARID3A	chr16:82068380-82069032	HepG2	liver:	n/a	n/a
10	JUND	chr16:82068469-82068917	HepG2	liver:	n/a	chr16:82068585-82068596 chr16:82068692-82068702
11	FOSL2	chr16:82068396-82069175	HepG2	liver:	n/a	chr16:82068585-82068596 chr16:82068692-82068703 chr16:82068692-82068702
12	FOXA1	chr16:82068487-82069070	HepG2	liver:	n/a	n/a
13	TEAD4	chr16:82068449-82069054	HepG2	liver:	n/a	n/a
14	POLR2A	chr16:82068459-82069169	HepG2	liver:	n/a	n/a
15	POLR2A	chr16:82068789-82069196	HepG2	liver:	n/a	n/a
16	POLR2A	chr16:82068455-82069326	HepG2	liver:	n/a	n/a
17	STAT3	chr16:82068547-82068973	MCF10A-Er-Src	breast:	n/a	chr16:82068784-82068796
18	SP1	chr16:82068409-82069027	HepG2	liver:	n/a	chr16:82068781-82068793 chr16:82068899-82068906 chr16:82068782-82068791 chr16:82068788-82068797
19	MYBL2	chr16:82068428-82069012	HepG2	liver:	n/a	n/a
20	NFIC	chr16:82068327-82068987	HepG2	liver:	n/a	n/a
21	RCOR1	chr16:82068590-82069110	HepG2	liver:	n/a	n/a
22	POLR2A	chr16:82068704-82069173	HepG2	liver:	n/a	n/a
23	POLR2A	chr16:82068686-82069329	MCF10A-Er-Src	breast:	n/a	n/a
24	MXI1	chr16:82068582-82069206	HepG2	liver:	n/a	n/a
25	HEY1	chr16:82068415-82069191	HepG2	liver:	n/a	n/a
26	TCF12	chr16:82068337-82068905	SK-N-SH	brain:	n/a	n/a
27	RXRA	chr16:82068524-82068957	HepG2	liver:	n/a	n/a
28	MYC	chr16:82068574-82068958	MCF10A-Er-Src	breast:	n/a	n/a
29	SIN3AK20	chr16:82068495-82069050	HepG2	liver:	n/a	n/a
30	MAX	chr16:82068625-82068947	HepG2	liver:	n/a	n/a
31	FOSL2	chr16:82068435-82069012	HepG2	liver:	n/a	chr16:82068585-82068596 chr16:82068692-82068703 chr16:82068692-82068702
32	FOS	chr16:82068522-82068917	MCF10A-Er-Src	breast:	n/a	chr16:82068585-82068596 chr16:82068692-82068702
33	FOXA1	chr16:82068439-82069162	HepG2	liver:	n/a	n/a
34	ELF1	chr16:82068537-82068963	HepG2	liver:	n/a	chr16:82068645-82068656
35	SIN3AK20	chr16:82068527-82069070	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
HSD17B2	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11648233	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs11860188	0.81[CEU][hapmap]
rs2966245	0.82[TSI][hapmap];0.82[YRI][hapmap]
rs6564961	0.84[GIH][hapmap];0.81[AMR][1000 genomes]
rs8044837	0.81[AMR][1000 genomes]
rs8059915	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82064800-82069400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:82065000-82069400	Enhancers	HMEC	breast
3	chr16:82066400-82069200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:82066800-82069400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:82067000-82069400	Enhancers	HUVEC	blood vessel
6	chr16:82067000-82070000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:82067400-82069000	Weak transcription	Gastric	stomach
8	chr16:82067400-82069200	Enhancers	A549	lung
9	chr16:82067400-82069600	Weak transcription	Small Intestine	intestine
10	chr16:82067400-82077000	Weak transcription	Right Atrium	heart
11	chr16:82068000-82072800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr16:82068200-82069000	Enhancers	NH-A	brain
13	chr16:82068200-82069000	Flanking Active TSS	NHEK	skin
14	chr16:82068200-82069200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr16:82068200-82069200	Enhancers	HSMMtube	muscle
16	chr16:82068200-82071600	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr16:82068400-82069200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr16:82068400-82069200	Enhancers	Fetal Lung	lung
19	chr16:82068400-82069400	Enhancers	HSMM	muscle
20	chr16:82068400-82070200	Active TSS	Colonic Mucosa	Colon
21	chr16:82068600-82069000	Flanking Active TSS	Stomach Mucosa	stomach
22	chr16:82068600-82069200	Flanking Active TSS	Fetal Stomach	stomach
23	chr16:82068600-82069400	Flanking Active TSS	Fetal Kidney	kidney
24	chr16:82068600-82070800	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr16:82068600-82071600	Active TSS	Fetal Intestine Large	intestine
26	chr16:82068600-82071600	Active TSS	Fetal Intestine Small	intestine
27	chr16:82068600-82071800	Active TSS	Liver	Liver
28	chr16:82068600-82072000	Active TSS	Duodenum Mucosa	Duodenum
29	chr16:82068600-82072600	Active TSS	Placenta	Placenta
30	chr16:82068800-82069000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr16:82068800-82069000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr16:82068800-82069000	Enhancers	Lung	lung
33	chr16:82068800-82069000	Active TSS	HepG2	liver
34	chr16:82068800-82069000	Active TSS	NHLF	lung
35	chr16:82068800-82069200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr16:82068800-82069200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr16:82068800-82069800	Active TSS	Sigmoid Colon	Sigmoid Colon
38	chr16:82068800-82070400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr16:82068800-82070800	Active TSS	Pancreas	Pancrea
40	chr16:82068800-82070800	Active TSS	Rectal Smooth Muscle	rectum
41	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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