Variant report

Variant	rs11860188
Chromosome Location	chr16:82085430-82085431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11642323	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11648233	0.90[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2042429	1.00[CHB][hapmap]
rs2873459	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2966245	0.90[CEU][hapmap];0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs3751860	0.91[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4398102	0.90[CEU][hapmap];0.82[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4445895	0.81[CEU][hapmap]
rs4480799	0.83[ASN][1000 genomes]
rs4497679	0.86[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6564961	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs8044837	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs8059915	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs8061074	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8061420	0.95[EUR][1000 genomes]
rs8191138	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8191148	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82074200-82085600	Enhancers	HepG2	liver
2	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
3	chr16:82080000-82089200	Enhancers	Liver	Liver
4	chr16:82080200-82086400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr16:82080800-82085600	Enhancers	Fetal Intestine Small	intestine
6	chr16:82082400-82086600	Enhancers	Stomach Mucosa	stomach
7	chr16:82083400-82086800	Enhancers	Pancreas	Pancrea
8	chr16:82083800-82088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr16:82084000-82085600	Weak transcription	Gastric	stomach
10	chr16:82084000-82088400	Weak transcription	Placenta	Placenta
11	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
12	chr16:82084400-82088800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr16:82085000-82086000	Weak transcription	Fetal Lung	lung
14	chr16:82085000-82087200	Enhancers	Duodenum Mucosa	Duodenum
15	chr16:82085200-82085800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr16:82085200-82086400	Bivalent Enhancer	Small Intestine	intestine
17	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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