Variant report

Variant	rs2873459
Chromosome Location	chr16:82107401-82107402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11642323	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11860188	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2911422	0.81[EUR][1000 genomes]
rs2966245	0.95[EUR][1000 genomes]
rs3751860	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4398102	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4497679	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7498701	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8061074	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8061420	0.84[EUR][1000 genomes]
rs8191138	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8191148	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82097400-82116800	Weak transcription	Colonic Mucosa	Colon
2	chr16:82099600-82108800	Strong transcription	Placenta	Placenta
3	chr16:82101000-82108400	Strong transcription	Duodenum Mucosa	Duodenum
4	chr16:82102400-82107600	Strong transcription	Fetal Intestine Large	intestine
5	chr16:82102600-82108200	Strong transcription	HepG2	liver
6	chr16:82104000-82110200	Weak transcription	Pancreas	Pancrea
7	chr16:82104400-82116400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr16:82104800-82124400	Weak transcription	Fetal Stomach	stomach
9	chr16:82105200-82115000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr16:82106400-82107600	Weak transcription	HSMMtube	muscle
11	chr16:82106400-82111200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:82106400-82115000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:82106600-82108800	Strong transcription	Liver	Liver
14	chr16:82106600-82115600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr16:82106800-82110200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr16:82107200-82110200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links