Variant report

Variant	rs8061074
Chromosome Location	chr16:82081828-82081829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11642323	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11648233	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11860188	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2873459	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2966245	0.85[EUR][1000 genomes]
rs3751860	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4398102	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4480799	0.89[ASN][1000 genomes]
rs4497679	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6564961	0.87[EUR][1000 genomes]
rs8044837	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8059915	0.82[EUR][1000 genomes]
rs8061420	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8191138	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8191148	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon
2	chr16:82074200-82085600	Enhancers	HepG2	liver
3	chr16:82075200-82082400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
5	chr16:82077000-82083800	Weak transcription	Lung	lung
6	chr16:82079800-82082800	Weak transcription	Placenta	Placenta
7	chr16:82079800-82082800	Weak transcription	Gastric	stomach
8	chr16:82079800-82082800	Weak transcription	Small Intestine	intestine
9	chr16:82079800-82084200	Weak transcription	Fetal Lung	lung
10	chr16:82080000-82089200	Enhancers	Liver	Liver
11	chr16:82080200-82086400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr16:82080800-82085600	Enhancers	Fetal Intestine Small	intestine
13	chr16:82081000-82083800	Enhancers	Duodenum Mucosa	Duodenum
14	chr16:82081200-82082000	Enhancers	Pancreas	Pancrea
15	chr16:82081200-82082200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr16:82081400-82082400	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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