Variant report

Variant	rs3751860
Chromosome Location	chr16:82105571-82105572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82104757..82105690-chr16:82117301..82118203,5	MCF-7	breast:
2	chr16:82104751..82105655-chr16:82170497..82171564,4	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11642323	0.96[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11648233	0.84[CEU][hapmap];0.83[JPT][hapmap]
rs11860188	0.91[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2873459	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2911422	0.82[EUR][1000 genomes]
rs2966245	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4398102	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4497679	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6564961	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs7498701	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8044837	0.89[CEU][hapmap]
rs8059915	0.89[CEU][hapmap]
rs8061074	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8061420	0.86[EUR][1000 genomes]
rs8191138	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8191148	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:82094600-82106200	Weak transcription	Lung	lung
3	chr16:82097400-82116800	Weak transcription	Colonic Mucosa	Colon
4	chr16:82099600-82108800	Strong transcription	Placenta	Placenta
5	chr16:82101000-82108400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr16:82102400-82107200	Strong transcription	Fetal Intestine Small	intestine
7	chr16:82102400-82107600	Strong transcription	Fetal Intestine Large	intestine
8	chr16:82102600-82108200	Strong transcription	HepG2	liver
9	chr16:82103000-82106600	Genic enhancers	Liver	Liver
10	chr16:82103400-82106800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr16:82103600-82106400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr16:82103800-82106400	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr16:82104000-82105800	Enhancers	HSMM	muscle
14	chr16:82104000-82105800	Flanking Active TSS	NHEK	skin
15	chr16:82104000-82106000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr16:82104000-82106400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr16:82104000-82106600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr16:82104000-82106600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr16:82104000-82110200	Weak transcription	Pancreas	Pancrea
20	chr16:82104200-82105600	Enhancers	Osteobl	bone
21	chr16:82104400-82105600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr16:82104400-82116400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr16:82104800-82106400	Enhancers	Stomach Mucosa	stomach
24	chr16:82104800-82124400	Weak transcription	Fetal Stomach	stomach
25	chr16:82105200-82115000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr16:82105400-82106200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr16:82105400-82106200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:82105400-82106400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr16:82105400-82106400	Enhancers	HSMMtube	muscle
30	chr16:82105400-82106600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr16:82105400-82106600	Enhancers	HMEC	breast

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