Variant report

Variant	rs8059915
Chromosome Location	chr16:82072744-82072745
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11642323	0.85[CEU][hapmap]
rs11648233	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11860188	0.91[CEU][hapmap];0.94[CHB][hapmap]
rs2042429	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2966245	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs3751860	0.89[CEU][hapmap]
rs4398102	0.88[CEU][hapmap]
rs4445895	0.84[CEU][hapmap]
rs4480799	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4497679	0.85[CEU][hapmap];0.90[CHB][hapmap]
rs6564961	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs8044837	0.85[CEU][hapmap]
rs8061074	0.82[EUR][1000 genomes]
rs8061420	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8191138	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82067400-82077000	Weak transcription	Right Atrium	heart
2	chr16:82068000-82072800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr16:82068800-82077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:82069200-82074000	Weak transcription	Fetal Lung	lung
5	chr16:82069200-82076600	Weak transcription	HSMMtube	muscle
6	chr16:82069200-82077400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:82069400-82075200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:82070200-82083400	Weak transcription	Colonic Mucosa	Colon
9	chr16:82070800-82074200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr16:82070800-82074800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr16:82070800-82081200	Weak transcription	Pancreas	Pancrea
12	chr16:82071600-82072800	Enhancers	Fetal Intestine Large	intestine
13	chr16:82071800-82072800	Flanking Active TSS	Liver	Liver
14	chr16:82071800-82073400	Enhancers	Fetal Stomach	stomach
15	chr16:82071800-82077800	Weak transcription	Stomach Mucosa	stomach
16	chr16:82072000-82072800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr16:82072000-82073000	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr16:82072000-82073200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr16:82072200-82072800	Enhancers	Gastric	stomach
20	chr16:82072400-82073000	Enhancers	Fetal Kidney	kidney
21	chr16:82072600-82072800	Enhancers	Fetal Intestine Small	intestine
22	chr16:82072600-82072800	Flanking Active TSS	Placenta	Placenta
23	chr16:82072600-82072800	Flanking Active TSS	HepG2	liver
24	chr16:82072600-82073400	Enhancers	Sigmoid Colon	Sigmoid Colon

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