Variant report

Variant	rs4451741
Chromosome Location	chr11:120577600-120577601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11217978	0.94[ASN][1000 genomes]
rs11217979	0.94[ASN][1000 genomes]
rs11217981	0.94[ASN][1000 genomes]
rs11217984	0.94[ASN][1000 genomes]
rs11217987	0.82[CHB][hapmap]
rs11603713	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12270409	0.82[CHB][hapmap]
rs12276408	0.92[CHB][hapmap]
rs12276440	0.94[ASN][1000 genomes]
rs12281464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12294858	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17124211	0.86[CHB][hapmap]
rs17124222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34463064	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61355898	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9630199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9630200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9630201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120568000-120580600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:120570000-120581600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:120575200-120577800	Weak transcription	Ovary	ovary
4	chr11:120576200-120578000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:120577000-120578600	ZNF genes & repeats	Pancreas	Pancrea
6	chr11:120577200-120577800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:120577200-120578000	ZNF genes & repeats	Spleen	Spleen
8	chr11:120577400-120578800	Strong transcription	Fetal Lung	lung
9	chr11:120577600-120579000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
10	chr11:120577600-120579400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:120577600-120579400	ZNF genes & repeats	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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