Variant report

Variant	rs17124211
Chromosome Location	chr11:120574350-120574351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120564446..120566306-chr11:120573634..120575547,2	MCF-7	breast:
2	chr11:120572331..120575238-chr11:120578976..120580756,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11217980	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217988	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217989	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11603713	0.86[CHB][hapmap]
rs11604327	0.87[CHB][hapmap]
rs12270261	0.89[CEU][hapmap]
rs12270409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12272864	0.89[CEU][hapmap]
rs12274300	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12276408	0.93[CHB][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12276440	1.00[CEU][hapmap]
rs12278795	0.89[CEU][hapmap]
rs12280296	0.89[CEU][hapmap]
rs12281464	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs12281614	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12291927	0.89[CEU][hapmap]
rs12293393	0.89[CEU][hapmap]
rs12294858	1.00[CEU][hapmap]
rs12295113	0.89[CEU][hapmap]
rs12295200	0.89[CEU][hapmap]
rs17124222	0.87[CHB][hapmap]
rs2846109	0.89[CEU][hapmap]
rs2852225	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2852227	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs28781001	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4451741	0.86[CHB][hapmap]
rs4567478	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61901379	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61901380	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61902685	0.95[ASN][1000 genomes]
rs61902688	0.97[ASN][1000 genomes]
rs7102869	0.89[CEU][hapmap]
rs7103021	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7103228	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7103418	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7119619	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7120727	0.89[EUR][1000 genomes]
rs7944756	0.89[CEU][hapmap]
rs7946325	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9630199	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs9630200	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs9630201	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120568000-120580600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:120570000-120581600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:120570200-120577400	Weak transcription	Fetal Lung	lung
4	chr11:120573000-120575200	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:120573200-120574800	Flanking Active TSS	GM12878-XiMat	blood
6	chr11:120573800-120574600	Enhancers	Primary B cells from cord blood	blood
7	chr11:120574200-120574600	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr11:120574200-120575000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:120574200-120576000	Weak transcription	Brain Angular Gyrus	brain

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