Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120564446..120566306-chr11:120573634..120575547,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11217980	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217987	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11217988	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12270409	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12273984	0.82[EUR][1000 genomes]
rs12274300	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12276408	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12281464	0.80[AMR][1000 genomes]
rs12281614	0.86[AMR][1000 genomes]
rs12294858	0.82[AMR][1000 genomes]
rs17124211	0.95[ASN][1000 genomes]
rs28781001	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4567478	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61901362	0.82[EUR][1000 genomes]
rs61901368	0.80[EUR][1000 genomes]
rs61901379	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61901380	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61902688	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7103021	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7103418	0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7119619	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7946325	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120561600-120569200	Weak transcription	Spleen	Spleen
2	chr11:120563200-120566400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120565600-120566200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:120565600-120567200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:120565800-120566400	Enhancers	Ovary	ovary
6	chr11:120565800-120567200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:120566000-120567400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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