Variant report

Variant	rs12270409
Chromosome Location	chr11:120568566-120568567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11217980	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11217987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217988	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11217989	1.00[CEU][hapmap]
rs11603713	0.82[CHB][hapmap]
rs11604327	0.82[CHB][hapmap]
rs12270261	0.81[CEU][hapmap]
rs12272864	0.81[CEU][hapmap]
rs12273984	0.83[EUR][1000 genomes]
rs12274300	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12276408	0.86[CHB][hapmap];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12276440	0.90[CEU][hapmap];0.80[AMR][1000 genomes]
rs12278795	0.81[CEU][hapmap]
rs12280296	0.81[CEU][hapmap]
rs12281464	0.91[CEU][hapmap];0.82[CHB][hapmap];0.82[AMR][1000 genomes]
rs12281614	0.84[AMR][1000 genomes]
rs12291927	0.81[CEU][hapmap]
rs12293393	0.81[CEU][hapmap]
rs12294858	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs12295113	0.81[CEU][hapmap]
rs12295200	0.81[CEU][hapmap]
rs17124211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17124222	0.82[CHB][hapmap]
rs2846109	0.81[CEU][hapmap]
rs2852225	0.81[CEU][hapmap]
rs2852227	0.81[CEU][hapmap]
rs28781001	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4451741	0.82[CHB][hapmap]
rs4567478	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61901362	0.83[EUR][1000 genomes]
rs61901368	0.81[EUR][1000 genomes]
rs61901379	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61901380	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61902685	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61902688	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7102869	0.81[CEU][hapmap]
rs7103021	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7103228	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs7103418	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7119619	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7944756	0.91[CEU][hapmap]
rs7946325	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9630199	0.90[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes]
rs9630200	0.90[CEU][hapmap];0.82[CHB][hapmap];0.80[AMR][1000 genomes]
rs9630201	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120561600-120569200	Weak transcription	Spleen	Spleen
2	chr11:120567200-120570400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120568000-120580600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120568400-120568600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived

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