Variant report

Variant	rs7102869
Chromosome Location	chr11:120580623-120580624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120572331..120575238-chr11:120578976..120580756,3	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10892616	1.00[ASN][1000 genomes]
rs11217987	0.81[CEU][hapmap]
rs11217988	0.81[CEU][hapmap]
rs11217989	0.81[CEU][hapmap]
rs12270261	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270409	0.81[CEU][hapmap]
rs12272864	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12274300	0.82[CEU][hapmap]
rs12276440	0.89[CEU][hapmap]
rs12278795	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12280296	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12281001	1.00[ASN][1000 genomes]
rs12281008	1.00[ASN][1000 genomes]
rs12281464	0.90[CEU][hapmap]
rs12283240	1.00[ASN][1000 genomes]
rs12284730	1.00[ASN][1000 genomes]
rs12287882	1.00[ASN][1000 genomes]
rs12288261	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12291927	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12292552	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293393	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12293509	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294046	1.00[ASN][1000 genomes]
rs12294858	0.82[CEU][hapmap]
rs12295113	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295200	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17124211	0.89[CEU][hapmap]
rs2846107	0.88[EUR][1000 genomes]
rs2846108	0.88[EUR][1000 genomes]
rs2846109	1.00[CEU][hapmap]
rs2852225	1.00[CEU][hapmap]
rs2852227	1.00[CEU][hapmap]
rs4567478	0.81[CEU][hapmap]
rs61901360	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901361	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901362	0.83[EUR][1000 genomes]
rs61901363	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901364	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901366	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901367	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901368	0.82[EUR][1000 genomes]
rs61901369	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61901370	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901371	0.91[EUR][1000 genomes]
rs61901372	0.91[EUR][1000 genomes]
rs61901373	0.91[EUR][1000 genomes]
rs61901374	0.91[EUR][1000 genomes]
rs61901375	0.91[EUR][1000 genomes]
rs61901376	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901377	0.89[EUR][1000 genomes]
rs61901378	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901382	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61901398	0.88[EUR][1000 genomes]
rs61901399	0.88[EUR][1000 genomes]
rs61902683	1.00[ASN][1000 genomes]
rs61902686	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61902687	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61902689	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103228	0.81[CEU][hapmap]
rs7103418	0.90[CEU][hapmap]
rs7119619	0.82[CEU][hapmap]
rs7944756	0.90[CEU][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9630199	0.89[CEU][hapmap]
rs9630200	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120570000-120581600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:120578600-120581600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120578800-120580800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:120578800-120581000	Weak transcription	Ovary	ovary
5	chr11:120579000-120581200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:120579000-120583000	Enhancers	Fetal Intestine Large	intestine
7	chr11:120579200-120585200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:120579400-120580800	Enhancers	HepG2	liver
9	chr11:120579600-120581000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:120579800-120581200	Weak transcription	Left Ventricle	heart
11	chr11:120579800-120581400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:120580000-120585800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:120580200-120581000	Weak transcription	Fetal Intestine Small	intestine
14	chr11:120580200-120583800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:120580400-120581000	Flanking Active TSS	GM12878-XiMat	blood
16	chr11:120580400-120581200	Enhancers	Adipose Nuclei	Adipose
17	chr11:120580400-120583000	Enhancers	Brain Hippocampus Middle	brain
18	chr11:120580400-120583000	Enhancers	Fetal Lung	lung
19	chr11:120580400-120583800	Enhancers	NHDF-Ad	bronchial
20	chr11:120580600-120581000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
21	chr11:120580600-120581000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:120580600-120581800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:120580600-120582200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:120580600-120582200	Enhancers	Brain Angular Gyrus	brain
25	chr11:120580600-120582200	Enhancers	Brain Anterior Caudate	brain
26	chr11:120580600-120582200	Enhancers	Brain Cingulate Gyrus	brain
27	chr11:120580600-120582200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr11:120580600-120582600	Enhancers	NH-A	brain
29	chr11:120580600-120583000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:120580600-120583000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:120580600-120583000	Enhancers	Osteobl	bone
32	chr11:120580600-120583200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:120580600-120583600	Enhancers	NHLF	lung

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