Variant report

Variant	rs12292552
Chromosome Location	chr11:120565023-120565024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120557930..120559568-chr11:120564023..120565986,2	MCF-7	breast:
2	chr11:120564446..120566306-chr11:120573634..120575547,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10892613	0.89[YRI][hapmap]
rs10892616	0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12270261	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272864	0.92[EUR][1000 genomes]
rs12278795	0.94[EUR][1000 genomes]
rs12280296	0.94[EUR][1000 genomes]
rs12281001	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12281008	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12283240	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12284730	1.00[ASN][1000 genomes]
rs12286467	0.89[YRI][hapmap]
rs12287882	0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12288261	0.94[EUR][1000 genomes]
rs12291927	0.94[EUR][1000 genomes]
rs12293393	0.94[EUR][1000 genomes]
rs12293509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294046	0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12295113	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12295200	0.92[EUR][1000 genomes]
rs2846107	0.85[EUR][1000 genomes]
rs2846108	0.85[EUR][1000 genomes]
rs61901360	0.94[EUR][1000 genomes]
rs61901361	0.94[EUR][1000 genomes]
rs61901362	0.84[EUR][1000 genomes]
rs61901363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901364	0.94[EUR][1000 genomes]
rs61901366	0.94[EUR][1000 genomes]
rs61901367	0.94[EUR][1000 genomes]
rs61901368	0.83[EUR][1000 genomes]
rs61901369	0.94[EUR][1000 genomes]
rs61901370	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901371	0.92[EUR][1000 genomes]
rs61901372	0.92[EUR][1000 genomes]
rs61901373	0.92[EUR][1000 genomes]
rs61901374	0.92[EUR][1000 genomes]
rs61901375	0.92[EUR][1000 genomes]
rs61901376	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901377	0.94[EUR][1000 genomes]
rs61901378	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901398	0.85[EUR][1000 genomes]
rs61901399	0.85[EUR][1000 genomes]
rs61902683	1.00[ASN][1000 genomes]
rs61902686	0.92[EUR][1000 genomes]
rs61902687	0.92[EUR][1000 genomes]
rs61902689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102869	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120561600-120569200	Weak transcription	Spleen	Spleen
2	chr11:120561800-120565800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:120563200-120566400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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