Variant report

Variant	rs2846107
Chromosome Location	chr11:120589674-120589675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:120588756..120591317-chr11:120596716..120599050,2	K562	blood:
2	chr11:120586309..120588238-chr11:120588252..120589968,2	MCF-7	breast:
3	chr11:120196443..120199058-chr11:120588153..120590155,2	MCF-7	breast:
4	chr11:120584157..120585682-chr11:120588505..120590152,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181264	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12270261	0.92[EUR][1000 genomes]
rs12272864	0.88[EUR][1000 genomes]
rs12278795	0.89[EUR][1000 genomes]
rs12280296	0.89[EUR][1000 genomes]
rs12288261	0.89[EUR][1000 genomes]
rs12291927	0.89[EUR][1000 genomes]
rs12292552	0.85[EUR][1000 genomes]
rs12293393	0.89[EUR][1000 genomes]
rs12293509	0.90[EUR][1000 genomes]
rs12295113	0.90[EUR][1000 genomes]
rs12295200	0.87[EUR][1000 genomes]
rs2846108	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2846109	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61901360	0.89[EUR][1000 genomes]
rs61901361	0.89[EUR][1000 genomes]
rs61901363	0.90[EUR][1000 genomes]
rs61901364	0.89[EUR][1000 genomes]
rs61901366	0.89[EUR][1000 genomes]
rs61901367	0.89[EUR][1000 genomes]
rs61901369	0.89[EUR][1000 genomes]
rs61901370	0.89[EUR][1000 genomes]
rs61901371	0.88[EUR][1000 genomes]
rs61901372	0.88[EUR][1000 genomes]
rs61901373	0.88[EUR][1000 genomes]
rs61901374	0.88[EUR][1000 genomes]
rs61901375	0.88[EUR][1000 genomes]
rs61901376	0.89[EUR][1000 genomes]
rs61901377	0.89[EUR][1000 genomes]
rs61901378	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61901398	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61901399	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902686	0.88[EUR][1000 genomes]
rs61902687	0.88[EUR][1000 genomes]
rs61902689	0.90[EUR][1000 genomes]
rs6589834	0.88[EUR][1000 genomes]
rs7102869	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3693392	chr11:120549745-120628012	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120585800-120590000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:120586200-120590000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:120586400-120593200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:120586600-120590400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:120587600-120590000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:120587800-120590600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:120587800-120591000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:120588000-120590200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:120588400-120591000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:120588400-120591000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:120588800-120591000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:120589000-120590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:120589000-120590800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr11:120589200-120590200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:120589200-120590600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:120589200-120591000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:120589200-120593200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:120589400-120591000	Enhancers	Ovary	ovary
19	chr11:120589400-120593600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:120589600-120590800	Weak transcription	Esophagus	oesophagus
21	chr11:120589600-120591400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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